PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462942416
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HD-ZIP
Protein Properties Length: 477aa    MW: 53263.9 Da    PI: 8.7411
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462942416genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox491.1e-151391856
               HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox 18 lFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
               +F+++++p++++r +L+++lgL+ rq+k+WFqNrR+++k
  462942416  1 MFKECPHPDENQRMQLSRELGLEPRQIKFWFQNRRTQMK 39
               69**********************************998 PP
2START67.34.4e-2219730170163
                GCT-TT-S....EEEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEEC CS
      START  70 eqWdetla....kaetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepks 158
                 +W e ++    ka t++v+ +g     + l+lm+ el ++sp+vp R+f f+Ry+rq + g w+i+d+Svd +       ++  R+ +lpSg+li +++
  462942416 197 SKWMEFFPaivcKARTIDVLVNGmagrsESLVLMYEELHVMSPVVPtREFCFLRYCRQIEHGLWAIADISVDIPPRDARfGAPPPRSCRLPSGCLIADMA 296
                389999999999***********************************************************9877777779999**************** PP

                TCEEE CS
      START 159 nghsk 163
                ng+sk
  462942416 297 NGYSK 301
                ***98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.9E-4145IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.5E-15146IPR009057Homeodomain-like
SuperFamilySSF466891.84E-13147IPR009057Homeodomain-like
PROSITE profilePS5007115.046141IPR001356Homeobox domain
PfamPF000463.6E-13139IPR001356Homeobox domain
CDDcd000861.43E-13242No hitNo description
PROSITE patternPS0002701639IPR017970Homeobox, conserved site
SuperFamilySSF559614.81E-14196301No hitNo description
PfamPF018522.3E-17197301IPR002913START domain
PROSITE profilePS5084818.061198301IPR002913START domain
SuperFamilySSF559617.28E-8324410No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MFKECPHPDE NQRMQLSREL GLEPRQIKFW FQNRRTQMKA QHERADNCFL RAENDKIRCE  60
NIAMREALRN VICPTCGGPP VADDYFDEQK LRMENARLKE EASRLSHSPC CALLLMDRLM  120
IRFPHCVLLD RVSSLTSKYL GRPITQLPPV QPLSMSSLDL SVGGLGSPAL GPSLDLDLLS  180
GASSGLPPFH HQLPTPSKWM EFFPAIVCKA RTIDVLVNGM AGRSESLVLM YEELHVMSPV  240
VPTREFCFLR YCRQIEHGLW AIADISVDIP PRDARFGAPP PRSCRLPSGC LIADMANGYS  300
KRACDRYACL VAAGMPHREV AGVTPEGKRS MMKLSQRMVS SFCGSLSASQ LHRWTTLCGP  360
NDVGVRVMVH RSTDPGQPSG VVLSAATSIW LPVPCERVFA FVRDENTRSQ VRQRRPTDYR  420
SFFGLLPEMR VLNLHCMGWL VAVGRAVARE PGAGGVADPQ RIAPRELHLL VKSKPAI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462942416
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0870551e-135BT087055.2 Zea mays full-length cDNA clone ZM_BFc0139M13 mRNA, complete cds.
GenBankEU9553831e-135EU955383.1 Zea mays clone 1530367 hypothetical protein mRNA, complete cds.
GenBankKJ7285231e-135KJ728523.1 Zea mays clone pUT6828 HB transcription factor (HB83) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008789232.11e-153homeobox-leucine zipper protein ROC8-like
SwissprotQ69T581e-120ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLA0A3L6F4D20.0A0A3L6F4D2_MAIZE; Homeobox-leucine zipper protein ROC8
STRINGGRMZM2G126646_P011e-174(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29123770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.11e-57homeodomain GLABROUS 11