PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462942509
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 193aa    MW: 21076.2 Da    PI: 9.1994
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462942509genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.31.3e-08468655
               HHHHHHHHHHHHHHHHHHHCTSCCC.................TTS-.STCHHHHHHHHHHHHHHH CS
        HLH  6 nerErrRRdriNsafeeLrellPkas..............kapskK.lsKaeiLekAveYIksLq 55
               + +E++RR +++    +L +llP+a               ++p+k  ++  + Le A  YIk+L+
  462942509  4 KDVEKNRRLHMKGLCLKLSSLLPPAAkqasllqatvpatcSNPNKDtVTQLDHLENAAAYIKQLK 68
               689*********************666*************7777777****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.369167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-10377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-8478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-5467IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MERKDVEKNR RLHMKGLCLK LSSLLPPAAK QASLLQATVP ATCSNPNKDT VTQLDHLENA  60
AAYIKQLKGR IEELKRRKGG AGGDGSCKKQ RVEVATAGVR MPVIEVRYQD GTLDVVLISE  120
AGRPFKLHEV ITVLEQEGAE VVSASFSVVG DKIFYTIHSQ ALSSRIGLEA TRVSERLQDL  180
LKNSAVVATD DLQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap462942509
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0942138e-89FP094213.1 Phyllostachys edulis cDNA clone: bphylf003c24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967963.12e-89transcription factor bHLH168
TrEMBLA0A1E5WHH63e-88A0A1E5WHH6_9POAL; Uncharacterized protein
STRINGSi002847m8e-89(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.12e-19bHLH family protein