PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462942723
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 101aa    MW: 11610.5 Da    PI: 10.1295
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462942723genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.55.5e-143075655
               HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
               +++Er RR ri +++ +L+el+P+      k  + a++L +Av+YIk+Lq
  462942723 30 SIAERVRRTRISERIRKLQELVPNM----EKQTNTADMLDLAVDYIKELQ 75
               689*********************7....467*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.2432474IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-172785IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.00E-102879No hitNo description
Gene3DG3DSA:4.10.280.102.0E-162996IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-133080IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-113075IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MAAIEKFLQF QDAVPCKIRA KRGCATHPRS IAERVRRTRI SERIRKLQEL VPNMEKQTNT  60
ADMLDLAVDY IKELQKQVKV LNDSRANCTC SASKLQNQFT C
Cis-element ? help Back to Top
SourceLink
PlantRegMap462942723
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9768151e-106EU976815.1 Zea mays clone 990854 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151233.16e-61uncharacterized protein LOC100284866
SwissprotQ66GR37e-50BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A0A9EPN33e-66A0A0A9EPN3_ARUDO; Uncharacterized protein
STRINGTRIUR3_26625-P12e-63(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.18e-42bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]