PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462943268
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 215aa    MW: 23359.5 Da    PI: 8.6782
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462943268genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.7e-181462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEde+l  +v+q+G g +W + +++ g++R++k+c++rw++yl
        462943268 14 RGPWSPEEDERLRSYVQQHGIGgNWISLPQKAGLNRCGKSCRLRWLNYL 62
                     89******************999************************97 PP
2Myb_DNA-binding383.9e-1271111446
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       T++Ed ++  + +  G++ W+ Ia++++ gRt++++k++w++
        462943268  71 YTEQEDRIICSLYNSIGSR-WSIIASKLP-GRTDNDVKNYWNT 111
                      69*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.058966IPR017930Myb domain
SuperFamilySSF466891.42E-2812109IPR009057Homeodomain-like
SMARTSM007177.3E-121364IPR001005SANT/Myb domain
PfamPF002493.9E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-251569IPR009057Homeodomain-like
CDDcd001673.71E-101662No hitNo description
PROSITE profilePS5129414.5767117IPR017930Myb domain
SMARTSM007171.3E-1167115IPR001005SANT/Myb domain
PfamPF002497.2E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-2270116IPR009057Homeodomain-like
CDDcd001676.01E-971111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MGRAPCCDKA TVKRGPWSPE EDERLRSYVQ QHGIGGNWIS LPQKAGLNRC GKSCRLRWLN  60
YLRPDIKHGG YTEQEDRIIC SLYNSIGSRW SIIASKLPGR TDNDVKNYWN TKLKKKAMAA  120
ATSPALSPAS SSVTSSPSCD GRFATGFPQP QGLIRFDAPA TPPCRSRTEL APVPPPAVAL  180
DGVWAPSAPA SDAVAPLDDD VFLHELVGGD QLLLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-27141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462943268
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794301e-162HF679430.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB24 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637875.12e-89transcription factor RAX2
SwissprotQ9FKL21e-68MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A3L6T1M04e-92A0A3L6T1M0_PANMI; Transcription factor RAX2-like
STRINGPavir.J11789.1.p7e-89(Panicum virgatum)
STRINGORUFI05G26880.18e-89(Oryza rufipogon)
STRINGOS05T0553400-018e-89(Oryza sativa)
STRINGORGLA05G0216200.19e-89(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.15e-66myb domain protein 84
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]