PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462943375
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HB-other
Protein Properties Length: 381aa    MW: 41723.8 Da    PI: 6.9875
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462943375genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox20.67.7e-071575856
               -HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
   Homeobox  8 tkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
                + ++ e+e+  ++  n+ ps++  + LA+k            ++ +qV +WF NrR+ ++
  462943375 15 LPAEVAEMEARLQQlnNSIPSRTVLQTLADKFsasperagrvAIQPKQVWNWFPNRRYSHR 75
               5677888888888666999***************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.13E-91279IPR009057Homeodomain-like
PROSITE profilePS500719.411377IPR001356Homeobox domain
CDDcd000860.002811375No hitNo description
Gene3DG3DSA:1.10.10.602.3E-51380IPR009057Homeodomain-like
PfamPF000462.2E-41475IPR001356Homeobox domain
PfamPF167191.6E-41135262IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MGRPPSSGAP AFRFLPAEVA EMEARLQQLN NSIPSRTVLQ TLADKFSASP ERAGRVAIQP  60
KQVWNWFPNR RYSHRAKNVR TAPPPATKMT PSGADHLQHA TASSAFRAAQ TPAAAAGAHP  120
GSSPAAGKGA VEGVQVEFEA KSARDGAWYD VAAFLSHRLF ESGDPEVRVR FSGFGAEEDE  180
WINVRKCVRQ RSLPCEATEC VAVLPGDLIL CFQEGKEQAL YFDAVVLDAQ RRRHDVRGCR  240
CRFLVRYTHD DSEEIVPLRK VCRRPETDYR LQILHAARAA AASADVRTPP KEVKVESASN  300
EKSPAEKKPP KQHKMMDVNT DEVSMVSDQE AASKATGPAP SARSETCNDS SSEVVTKDAE  360
PAQVIEVDDE VQVVDKVKEA E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A4e-461382666134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B4e-461382666134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A4e-461382666134SHH1 SAWADEE
4iur_B4e-461382666134SHH1 SAWADEE
4iut_A4e-461382666134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B4e-461382666134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A4e-461382666134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B4e-461382666134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A4e-461382666134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B4e-461382666134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462943375
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956551.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2
RefseqXP_022680276.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2
RefseqXP_022680277.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2
RefseqXP_022680278.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2
SwissprotQ8RWJ71e-125SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLK3ZU860.0K3ZU86_SETIT; Uncharacterized protein
STRINGPavir.Bb01334.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41902948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-107sequence-specific DNA binding transcription factors;sequence-specific DNA binding