PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462943497
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family CAMTA
Protein Properties Length: 1090aa    MW: 119987 Da    PI: 5.932
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462943497genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1131.43.4e-4111119336118
       CG-1  36 sgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118
                 gsl+L++rk++ryfrkDG++w+kk d ktv+E+he+LK g+++vl+cyYah+e+n +fqrr+yw+Lee++ +ivlvhyle+k
  462943497 111 GGSLFLFDRKVLRYFRKDGHNWRKKNDQKTVKEAHERLKSGSIDVLHCYYAHGEDNINFQRRTYWMLEEDFMHIVLVHYLETK 193
                58******************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143756.08477198IPR005559CG-1 DNA-binding domain
SMARTSM010761.5E-4385193IPR005559CG-1 DNA-binding domain
PfamPF038597.0E-35111191IPR005559CG-1 DNA-binding domain
SuperFamilySSF812961.89E-11502598IPR014756Immunoglobulin E-set
SuperFamilySSF484032.18E-16705807IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.7E-17707809IPR020683Ankyrin repeat-containing domain
CDDcd002043.58E-13707805No hitNo description
PROSITE profilePS5029717.343713807IPR020683Ankyrin repeat-containing domain
SMARTSM002480.023746775IPR002110Ankyrin repeat
PROSITE profilePS500888.549746778IPR002110Ankyrin repeat
SMARTSM002481400785814IPR002110Ankyrin repeat
SMARTSM000150.15907929IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525408.5E-8908958IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500968.425908937IPR000048IQ motif, EF-hand binding site
PfamPF006120.0063910928IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0022930952IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.56931955IPR000048IQ motif, EF-hand binding site
PfamPF006122.1E-4933952IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1090 aa     Download sequence    Send to blast
SLLVISPLIT SAPHQSPPPT SFSAAQQNPV PSLPQKSCRN PPKPHAPLGS PSDPSEWREA  60
ELAFDPCAPR SPPSSRPGRA VDGAWPSPLT PLPVMASASD ARRLAVVPQL GGSLFLFDRK  120
VLRYFRKDGH NWRKKNDQKT VKEAHERLKS GSIDVLHCYY AHGEDNINFQ RRTYWMLEED  180
FMHIVLVHYL ETKGGKSHRA RANNNMIQEA AVDSPLSQLP SHTIEGESSV SGHASEYEEA  240
ESDTYSGGAR YNSFTWMQQH ENGGGPVIDS SVFSSYTPAS SAGSYQGLRS MAHNTSIYSG  300
TQDKSSLVLD GSSPVFTLNG HASQNDLPSW NEVVRLDNGP VQMPPLQFPV LPEQGTSMEG  360
LGVDYLTFDE VYSDGLSLKD INAAGADAES FWQLSSGTGD MSAIENSYPQ NDGSLEAASY  420
PFLKTQSSSL SDILKDGFKK SDSFTRWMSK ELPEVEDSQI QSSSGAYWST EEADSIIEAS  480
SREPLDQFTL APMVSQDQLF SIVDFAPTWT YVGSKTKATN SHLLDMQILI IGTILNNSQV  540
NKKCKWSCMF GEVEVPAEML ADGSLFCYSP SHKPGRVPFY ITCSNRLACS EVREFEFRPS  600
DSSYMDAPSP HGATNKVYFQ IRLDKLVSLG QDEYQATISN PSVEMIDLSK KIGSLMMNND  660
EWSNLLKLAD DNELSTDDQK DQFAENLIKD KLHIWLLNKA GVGGKGPSVL DDEGQGVLHL  720
AAALGYDWAI RPTVSAGVNI NFRDIHGWTA LHWAAFCGRE RTVVALVALG AAPGALTDPT  780
PDFPSGSTPA DLASANGHKG ISGFLAESSL TSHLQALNLK EANMGEISGL PGIGDVTERT  840
SLQPASGDSL GAVRNAAQAA ARIYQVFRVQ SFQRKQAAQY EDGKGGISDE RALSLLSVKP  900
SKPGQDPLNA AATRIQNKFR GWKGRKEFLL IRQRIVKIQA HVRGHQVRKH YRKIVWSVGI  960
VEKVILRWRR RGAGLRGFRS TEGATEGSSG GTSSSLIQNK PARDDYDFLQ EGRKQTEERL  1020
QKALARVKSM AQYPEARDQY QRILTVVSKM QESQAQQEKM LEESIDMNEA DFMSEFKELW  1080
DDDTPIPGYF
Cis-element ? help Back to Top
SourceLink
PlantRegMap462943497
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793388.10.0calmodulin-binding transcription activator 3-like isoform X2
TrEMBLA0A3L6TUJ20.0A0A3L6TUJ2_PANMI; Calmodulin-binding transcription activator 3-like isoform X2
STRINGPavir.Ia02749.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1