PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462943539
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HD-ZIP
Protein Properties Length: 250aa    MW: 27847.4 Da    PI: 8.9581
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462943539genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox46.56.5e-153684856
               -HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox  8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
               +++q +  ++ Fe  +++  e++ +LA+ lgL+ rqV +WFqNrRa++k
  462943539 36 NANQRQGHQKNFELGNKLEPERKLQLARALGLQPRQVAIWFQNRRARWK 84
               45788888999*************************************9 PP
2HD-ZIP_I/II107.97.5e-3538120991
  HD-ZIP_I/II   9 eqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +q +   ++Fe  +kLeperK +lar+Lglqprqva+WFqnrRAR+ktkqlEkdy++Lkr++da+k++n++L +++++L++e+
    462943539  38 NQRQGHQKNFELGNKLEPERKLQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDVLKRQLDAVKADNDALLSHNKKLQAEI 120
                  677777899***********************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.13E-152288IPR009057Homeodomain-like
SMARTSM003891.3E-102990IPR001356Homeobox domain
PfamPF000462.3E-123684IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-153793IPR009057Homeodomain-like
PROSITE profilePS5007114.0264486IPR001356Homeobox domain
CDDcd000861.03E-114487No hitNo description
PRINTSPR000311.0E-55766IPR000047Helix-turn-helix motif
PROSITE patternPS0002706184IPR017970Homeobox, conserved site
PRINTSPR000311.0E-56682IPR000047Helix-turn-helix motif
PfamPF021831.2E-1486125IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MRSWDLVRSL PLPPPRLSSL PTNKKSKAMC RWPCTNANQR QGHQKNFELG NKLEPERKLQ  60
LARALGLQPR QVAIWFQNRR ARWKTKQLEK DYDVLKRQLD AVKADNDALL SHNKKLQAEI  120
LALKGGREAG SELINLNKET EASCSNRSEN SSEINLDISR TPPSDGAMDP PPPHQLAGDG  180
GMIPFYPSVG RPAGGVDFDQ LLHSSSGPKM EPHGNGGVHQ TPETASFGNL LCGVDETPPF  240
WPWADQQHFH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17886RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462943539
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9664901e-151EU966490.1 Zea mays clone 294849 homeobox-leucine zipper protein HAT7 mRNA, complete cds.
GenBankKJ7285061e-151KJ728506.1 Zea mays clone pUT6811 HB transcription factor (HB102) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796010.11e-116homeobox-leucine zipper protein HOX21-like isoform X2
SwissprotQ8S7W91e-109HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21
TrEMBLA0A3L6SDB51e-125A0A3L6SDB5_PANMI; Uncharacterized protein
STRINGPavir.Ia04323.1.p1e-124(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.13e-63HD-ZIP family protein