PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462943699
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 195aa    MW: 21574 Da    PI: 6.7157
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462943699genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.41.1e-3185141360
                -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                DgynWrKYGqK+vkgsefprsYY+Ct+++Cpvk+kve++  ++++ ei+Y+geHnh+k
  462943699  85 DGYNWRKYGQKKVKGSEFPRSYYKCTHPSCPVKRKVETTI-EGQIAEIVYSGEHNHPK 141
                9***************************************.***************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.92878142IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-2779142IPR003657WRKY domain
SuperFamilySSF1182906.02E-2580142IPR003657WRKY domain
SMARTSM007741.7E-3283141IPR003657WRKY domain
PfamPF031061.4E-2485140IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MQDHEKTAAL KPVASRPFST SRSFSKRLQD FSATDSRPVT ILEETSNMLE EMEVDTEQVV  60
SCDPLTTCDA VRKPMGGVKN NLSYDGYNWR KYGQKKVKGS EFPRSYYKCT HPSCPVKRKV  120
ETTIEGQIAE IVYSGEHNHP KPHPPRKPSS STSTEVAVAD LHDTSNVEAE IQTGGHNQVP  180
DITVTASGEH VQVVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-16851421674WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462943699
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2428552e-70AK242855.1 Oryza sativa Japonica Group cDNA, clone: J090073J20, full insert sequence.
GenBankAP0149682e-70AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankAY3418602e-70AY341860.1 Oryza sativa (japonica cultivar-group) WRKY20 mRNA, complete cds.
GenBankBX0004962e-70BX000496.1 Oryza sativa chromosome 12, . BAC OSJNBa0096E03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankBX0005032e-70BX000503.2 Oryza sativa chromosome 12, . BAC OSJNBb0077A02 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankCP0126202e-70CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819931.12e-74probable WRKY transcription factor 3
RefseqXP_025819932.12e-74probable WRKY transcription factor 3
TrEMBLA0A0A9G2V52e-81A0A0A9G2V5_ARUDO; WRKY3
TrEMBLA0A0A9PMD83e-81A0A0A9PMD8_ARUDO; Uncharacterized protein
STRINGPavir.Fa00406.1.p4e-69(Panicum virgatum)
STRINGSi014939m2e-69(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23252941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.22e-29WRKY family protein