PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462943921

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

LBD

Protein Properties

Length: 151aa MW: 16185.3 Da PI: 11.2887

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462943921	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	69.3	8.4e-22	96	147	1	52
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpee 52 aCaaCk++rrkC++dC+lapyfpa+q+++f +h+lFG+sn+lk+l++l+++ 462943921 96 ACAACKYQRRKCNADCPLAPYFPADQQRRFLHAHRLFGVSNILKTLRRLRPD 147 7**********************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.87	95	151	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-20	96	147	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MVPDSVPDNC PAGLRIHLVV TSASVGNARG FSSSSTGAWN LANAGTTTFH NNDLLLRRHG 60 RLPRPAPPPH SAHPSPRGGN GSNGVGSPSS SQQNQACAAC KYQRRKCNAD CPLAPYFPAD 120 QQRRFLHAHR LFGVSNILKT LRRLRPDLCA A

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462943921

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005388	4e-53	AP005388.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0086F04.
GenBank	AP014964	4e-53	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBank	CP012616	4e-53	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5228	34	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	1e-20	LOB domain-containing protein 22