PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462944066
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 255aa    MW: 27363.2 Da    PI: 7.1473
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462944066genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.2e-11136183455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++YI+sLq
  462944066 136 SHSLAERARREKISERMKILQDLVPGC----NKVIGKASVLDEIINYIQSLQ 183
                8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.05E-11130187No hitNo description
SuperFamilySSF474598.11E-18130198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-18132200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.355132182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-9136183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-11138188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MEPAPAVAAE LWRPPHLAAG GGHAAEAISA VTEKSNGSRG GAGAGRKRQR EPPASEDDSS  60
RIFSTSGGGG GQDLTDSEAK RFKANKTSDD NSSQKMEAQT DSRSAGKAVS QNPPAQEPPR  120
QDYIHVRARR GQATDSHSLA ERARREKISE RMKILQDLVP GCNKVIGKAS VLDEIINYIQ  180
SLQCQVEFLS MKLEAVNAHV SNGVEAFPSK DFGAQTYNTA PGLTFDTQAP REYSQGASPS  240
EWLHMQIGGA YERVS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462944066
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981383.11e-152transcription factor BHLH089
SwissprotQ84T081e-124BH089_ORYSJ; Transcription factor BHLH089
TrEMBLK4AE241e-151K4AE24_SETIT; Uncharacterized protein
STRINGSi037131m1e-151(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30653577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.14e-73BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]