PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462944114
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 890aa    MW: 97271.7 Da    PI: 6.6299
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462944114genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.20.000696967331355
                HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                R+ i +++ eLrel+P+ a      K s  + Lek+++++  Lq
  462944114 696 RQLIQDRIKELRELVPNgA------KCSIDALLEKTIKHMLFLQ 733
                67799************66......999999********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.9E-306154IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.804683732IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-4696741IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 890 aa     Download sequence    Send to blast
MAVGDALRRL CEEVGWSYAV FWKAIGAADP VHLVWEDGYC GHASCSAGSE TSEVGCEQGS  60
SVCTLVRKVM ASQVHVVGEG TVGRAAVTGN HLWIVHDGAN DHKLRSEVAA EMNHQFLAGI  120
QTIAIVPVLP RGVLQLGSTS VVMENTNLVL QYKKLCSQLN NRSSTASSSS VKNDMNQKVQ  180
SRPSNTPPSI YTADACSKFF SGSPGPYEQC YGLDATTVSN STLSNTARNA SMLMVAQRNG  240
QAVKEHILYA PDLRFRQQTT YCDTRPESNT QSSVVSSGFF SSVSTGMEKH PLMRSNSGRL  300
EQGNMEDFSD PRNVLLKSLA CRDPLVHENA NTALLHSRSQ APDFLNGRGN FDFLPGGSRV  360
VKGNLYASAE NQMLGHRCNS ISGMTGYRPT ISYKIPQSAQ LVMKMESPKR ETVQDSVALP  420
GSDIKVSCGL RTGVSQENQM SSSDPVCQKM VNEGNDPADV IVQVVKNMDS RKLPDTSDER  480
AASLLVDPTT ENDLFDMFGT EFHQLYSSVD NDLTWKTAKP ESSTRDAPES SVHHYTSRAY  540
DSVGEEFPYS GIFSLTDTDQ LLDAVISNVN PGGKQISGDS ASCKTSLTDI PSSSYCRSKE  600
TKHCESSGAP PLPMKNEFAV SNFVKQPCFL EKAEEGCLSQ NNGMQKSQIR LWIESGQNMK  660
CESVSASNSK GVDTSSKSSR KRSRPGENPK PRPKDRQLIQ DRIKELRELV PNGAKCSIDA  720
LLEKTIKHML FLQSVTKHAD NLKDSNESKI LGGENGPLKD CFEGGATWAF DVGSQSMTCP  780
IIVEDLERPR QMLVEMLCED RGIFLEIADF IKGLGLTILR GVMEARKNKI WARFTVEANR  840
DVTRMEIFLS LMRLLEPSCD GGGPGENPNN VKMPLGVVQY PVIPATGHLR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462944114
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808394.10.0transcription factor LHW-like
TrEMBLA0A1E5WGB50.0A0A1E5WGB5_9POAL; Transcription factor LHW
STRINGPavir.Ca00201.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26543242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.12e-48conserved peptide upstream open reading frame 7