PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462944244
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 201aa    MW: 22670.4 Da    PI: 11.4615
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462944244genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B388.94e-2833120787
                .-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
         B3   7 psdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                psdv+k++rlv+pk++ae+h           + +++ l++ed  g++W+++++y+++s++yvlt+GW++Fvk++gL +gD v F+++  
  462944244  33 PSDVGKLNRLVIPKQHAEKHfplqlpvaA-GECKGVLLSFEDAAGKVWRFRYSYWNSSQSYVLTQGWSRFVKEKGLHAGDAVGFYRSAA 120
                8**********************999953.345899*************************************************5543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.81527131IPR003340B3 DNA binding domain
SMARTSM010192.3E-1530130IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.5E-3432134IPR015300DNA-binding pseudobarrel domain
PfamPF023625.0E-2533119IPR003340B3 DNA binding domain
SuperFamilySSF1019367.32E-2633123IPR015300DNA-binding pseudobarrel domain
CDDcd100173.88E-2435125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MLRKHTTAAP SPPWSPLRRR RRPTRTPPPP RRPSDVGKLN RLVIPKQHAE KHFPLQLPVA  60
AGECKGVLLS FEDAAGKVWR FRYSYWNSSQ SYVLTQGWSR FVKEKGLHAG DAVGFYRSAA  120
KQLFIDCKVR PRTTAAFVNA APVKAVRLFG VDLVTTPTRP ASAAPVQLEE MMAMNKRPRD  180
FIAASTPHMF FKKQCIDFAL T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-443313020117DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11622LRRRRRP
Cis-element ? help Back to Top
SourceLink
PlantRegMap462944244
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0174621e-101BT017462.1 Zea mays clone EL01N0407E07.c mRNA sequence.
GenBankEU9695191e-101EU969519.1 Zea mays clone 331400 DNA-binding protein RAV1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961326.19e-95AP2/ERF and B3 domain-containing protein Os05g0549800
SwissprotQ8RZX96e-73Y1934_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0693400
TrEMBLK3ZDE02e-93K3ZDE0_SETIT; Uncharacterized protein
STRINGSi024576m3e-94(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-48related to ABI3/VP1 2