PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462944319
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 156aa    MW: 17643.7 Da    PI: 11.3164
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462944319genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.37.6e-1886128347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+eEd+ +++a++++G++ W+tIar +  gRt++ +k++w++ 
        462944319  86 PFTPEEDDTILRAHAKFGNK-WATIARLLS-GRTDNAIKNHWNST 128
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.1935878IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.2E-106290IPR009057Homeodomain-like
SuperFamilySSF466893.06E-2562138IPR009057Homeodomain-like
PROSITE profilePS5129423.77979133IPR017930Myb domain
SMARTSM007174.9E-1583131IPR001005SANT/Myb domain
CDDcd001672.96E-1286129No hitNo description
PfamPF002492.5E-1586128IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-2191133IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MRWAVKVQSS PTNCNKPPNG FEEEHIPLRD KKSTHELHTR RRARGSFPHS NGRVSPGQLR  60
STPGRSGKSC RLRWCNQLSP QVEHRPFTPE EDDTILRAHA KFGNKWATIA RLLSGRTDNA  120
IKNHWNSTLK RNLARQGRNA DHDDVPAATA NLADVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-246413336105MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-246413336105C-Myb DNA-Binding Domain
1msf_C1e-246413336105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462944319
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794252e-95HF679425.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB19 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotO231603e-42MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A0K1SBH44e-43A0A0K1SBH4_REHGL; R2R3-MYB protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.11e-44myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]