PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462944543
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family G2-like
Protein Properties Length: 118aa    MW: 13369.3 Da    PI: 9.8227
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462944543genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1001.6e-314595151
    G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51
               kprl+WtpeLHerFv+av+qLGG+ekAtPkti++lm+++gLtl+h+kSHLQ
  462944543 45 KPRLKWTPELHERFVDAVNQLGGPEKATPKTIMRLMGIPGLTLYHLKSHLQ 95
               79************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.03242102IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.5E-294395IPR009057Homeodomain-like
SuperFamilySSF466892.33E-154496IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-214596IPR006447Myb domain, plants
PfamPF002494.6E-104796IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MYHQQQQQLQ SHNQHLSSRH SLPPEKQFLV QGGGDSGLIL STDAKPRLKW TPELHERFVD  60
AVNQLGGPEK ATPKTIMRLM GIPGLTLYHL KSHLQYLAAG RQQINYVKET DHQPATII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-2145101157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-2145101157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-2145101157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-2145101157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462944543
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463407.12e-52myb-related protein 1
SwissprotQ9SQQ92e-36PHL9_ARATH; Myb-related protein 2
TrEMBLA0A0A9DHX61e-52A0A0A9DHX6_ARUDO; Uncharacterized protein
STRINGSb02g043320.19e-52(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2073467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18240.32e-36myb-related protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]