PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462945215

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

bZIP

Protein Properties

Length: 401aa MW: 44872.9 Da PI: 6.6161

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462945215	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.7	7.8e-11	113	152	4	43
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 k+ rr+++NReAAr+sR+RKka+i++Le+ +L + + 462945215 113 EKVMRRLAQNREAARKSRLRKKAYIQQLETSRMKLAQLEQ 152 6899*************************86555544444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.0E-9	110	174	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.151	112	156	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	6.3E-8	113	153	IPR004827	Basic-leucine zipper domain
CDD	cd14708	5.04E-21	114	163	No hit	No description
SuperFamily	SSF57959	3.19E-7	115	158	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.7E-8	116	158	No hit	No description
PROSITE pattern	PS00036	0	117	132	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	5.0E-29	201	276	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MELYPGYLED HFNIHKLSIA SAAASPPEYM TSASAQFAAM PVRMGVYERP APAPIGGMWS 60 SEPFKVDSGG QVTSASTIME ADNKFDARLQ DVPQVALEEP TRSTDQETSK PPEKVMRRLA 120 QNREAARKSR LRKKAYIQQL ETSRMKLAQL EQELQRARQQ GVYANGNLGD SNLGFTGAVV 180 DPGVAAFEIE YSHWVDEQNR HTEELRNALQ GQTTDLELSM LVETGLNNYE HLFRIKSIAA 240 HSDVFYIMSG TWKTPAERFF LWIGGFRPSE VLKILRPQLE PLSEAQVVAV CGLQHTSTQA 300 EDALFQGMEK LQQNLAEALT NPFASSDAYM LQMADAVGRL KELVGFVTQA DHLRQTTLQQ 360 MHKILTKRQA ARGLLALGDY FQRLRALSQL WAARPRESAI S

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MELYPGYLED HFNIHKLSIA SAAASPPEYM TSASAQFAAM PVRMGVYERP APAPIGGMWS  60
SEPFKVDSGG QVTSASTIME ADNKFDARLQ DVPQVALEEP TRSTDQETSK PPEKVMRRLA  120
QNREAARKSR LRKKAYIQQL ETSRMKLAQL EQELQRARQQ GVYANGNLGD SNLGFTGAVV  180
DPGVAAFEIE YSHWVDEQNR HTEELRNALQ GQTTDLELSM LVETGLNNYE HLFRIKSIAA  240
HSDVFYIMSG TWKTPAERFF LWIGGFRPSE VLKILRPQLE PLSEAQVVAV CGLQHTSTQA  300
EDALFQGMEK LQQNLAEALT NPFASSDAYM LQMADAVGRL KELVGFVTQA DHLRQTTLQQ  360
MHKILTKRQA ARGLLALGDY FQRLRALSQL WAARPRESAI S

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462945215

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823702.1	0.0	transcription factor TGAL6-like isoform X1
Refseq	XP_025823703.1	0.0	transcription factor TGAL6-like isoform X1
Swissprot	A0A0P0WFC8	0.0	TGAL6_ORYSJ; Transcription factor TGAL6
TrEMBL	A0A0A9D9I6	0.0	A0A0A9D9I6_ARUDO; Uncharacterized protein
STRING	Pavir.Ga00349.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3571	38	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10030.2	1e-125	TGACG motif-binding factor 4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Okada A, et al. OsTGAP1, a bZIP transcription factor, coordinately regulates the inductive production of diterpenoid phytoalexins in rice. J. Biol. Chem., 2009. 284(39): p. 26510-8 [PMID:19635799] Okada K The biosynthesis of isoprenoids and the mechanisms regulating it in plants. Biosci. Biotechnol. Biochem., 2011. 75(7): p. 1219-25 [PMID:21737944] Yamane H Biosynthesis of phytoalexins and regulatory mechanisms of it in rice. Biosci. Biotechnol. Biochem., 2013. 77(6): p. 1141-8 [PMID:23748776] Miyamoto K, et al. Identification of target genes of the bZIP transcription factor OsTGAP1, whose overexpression causes elicitor-induced hyperaccumulation of diterpenoid phytoalexins in rice cells. PLoS ONE, 2014. 9(8): p. e105823 [PMID:25157897] Miyamoto K, et al. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]