PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462945242
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 251aa    MW: 26975.7 Da    PI: 6.674
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462945242genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.22.5e-1046782248
                     T.......-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 22 g.......tWktIartmgkgRtlkqcksrwqkyl 48
                     +        W++Iar+++ gRt++++k++w++yl
        462945242 46 PhrqkrglKWSRIARHLP-GRTDNEVKNYWNSYL 78
                     155555567*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.0552482IPR017930Myb domain
SMARTSM007170.00742880IPR001005SANT/Myb domain
SuperFamilySSF466893.12E-93282IPR009057Homeodomain-like
CDDcd001676.96E-84778No hitNo description
Gene3DG3DSA:1.10.10.606.1E-134979IPR009057Homeodomain-like
PfamPF002491.2E-75278IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MNRLRTRLSL SNQVTPFFFS HRHGTGKEKE TWARNAKALF STNPKPHRQK RGLKWSRIAR  60
HLPGRTDNEV KNYWNSYLKK RVEGNKEAGP STPAPTTATN SSAESDDSQS VKAAGDGTAH  120
ELPSSDSGSS EPRESSSADS SCLTGPHRHP APHAPVAPKV MFADWLDMDY ISGQVAAAPG  180
LDAVGAGASP GDHHQVASQG SVQVDGPCGV DVFGDSGAGC WEFQEQFDGM DQMQTGGFCD  240
LLSMSEFFGL N
Cis-element ? help Back to Top
SourceLink
PlantRegMap462945242
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0387442e-31BT038744.1 Zea mays full-length cDNA clone ZM_BFb0323B03 mRNA, complete cds.
GenBankHQ8587142e-31HQ858714.1 Zea mays clone UT1170 MYB transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953256.13e-86transcription factor MYB4
TrEMBLA0A0A9F8A81e-100A0A0A9F8A8_ARUDO; Uncharacterized protein
STRINGSi017947m1e-85(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP170737109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61420.11e-12myb domain protein 28