PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462945595
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family YABBY
Protein Properties Length: 267aa    MW: 28475.3 Da    PI: 10.7909
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462945595genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY41.64.4e-1330612253
      YABBY 22 lavsvPstslfkvvtvrCGhCtsllsvnlaka 53
               l+vsvP++slfk+vtvrCGhC+sll+vn++  
  462945595 30 LLVSVPTSSLFKTVTVRCGHCSSLLTVNMRGL 61
               79************************998765 PP
2YABBY125.76.5e-3917525293170
      YABBY  93 stsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                +t+ ++++ +++ ++ ++ + ++i+ PekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl
  462945595 175 RTNAAVNRRESHPTRRATLACNAIKSPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 252
                45555555566777777778899*****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046909.6E-133070IPR006780YABBY protein
PfamPF046907.7E-37187252IPR006780YABBY protein
SuperFamilySSF470954.58E-8197245IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.1E-4198246IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MSSSSTSSSA ASASAVFTPT PQPQTPPPPL LVSVPTSSLF KTVTVRCGHC SSLLTVNMRG  60
LLFPGTPTNT AAPPVVTSCT TTTTTIATPE PVSSVSNNNG QFNFPPSLNL QAPNPPHHHH  120
SILDEISSVN NPSLQLLEQH GLGGLIHGAR NAPPPPPLQQ LPPPAGKGAK EPTPRTNAAV  180
NRRESHPTRR ATLACNAIKS PEKRQRVPSA YNRFIKDEIQ RIKAGNPDIS HREAFSAAAK  240
NWAHFPHIHF GLMPDHHGLK KTSLLPQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap462945595
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3302282e-99AY330228.1 Triticum aestivum YABBY protein (YAB1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982656.14e-95protein YABBY 3
SwissprotQ8L5568e-74YAB3_ORYSJ; Protein YABBY 3
TrEMBLK4AD319e-94K4AD31_SETIT; Uncharacterized protein
STRINGSi036788m2e-94(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.18e-36YABBY family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]