PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462945699
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 247aa    MW: 26837.9 Da    PI: 9.6522
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462945699genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.81.7e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv  +   G  +W+++++  g+ R++k+c++rw +yl
        462945699 14 KGPWTAEEDQKLVSFILSNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding52.21.4e-1671111547
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +  E++l +d+++qlG++ W++Ia+ ++ gRt++++k++w+++
        462945699  71 SDAEEKLVIDLHAQLGNR-WSKIASQLP-GRTDNEIKNHWNTH 111
                      778***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-20562IPR009057Homeodomain-like
PROSITE profilePS5129414.474961IPR017930Myb domain
SuperFamilySSF466892.58E-2611108IPR009057Homeodomain-like
SMARTSM007177.5E-121363IPR001005SANT/Myb domain
PfamPF002493.7E-141461IPR001005SANT/Myb domain
CDDcd001671.14E-91661No hitNo description
PROSITE profilePS5129426.33462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-2463117IPR009057Homeodomain-like
SMARTSM007171.3E-1466114IPR001005SANT/Myb domain
CDDcd001671.79E-1271112No hitNo description
PfamPF002492.8E-1471111IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MGRQPCCDKV GLKKGPWTAE EDQKLVSFIL SNGQCCWRAV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SDAEEKLVID LHAQLGNRWS KIASQLPGRT DNEIKNHWNT HIKKKLKKMG  120
IDPLTHKPLQ PTTNQQQQNP KSPGFCTDEV PMMHPDEIMV PPAAQPSTTA CAAAVASTPA  180
TSYSASASSS CDEEVPFPAM DWPHDRRRAA GAVGRVPGAA AVAGVRGPLL QRVPVPAGGV  240
EQARALL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-29121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462945699
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0362291e-156BT036229.1 Zea mays full-length cDNA clone ZM_BFb0101M11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973482.11e-104myb-related protein 315
SwissprotQ9C7U72e-88MYB20_ARATH; Transcription factor MYB20
TrEMBLK3YIS51e-103K3YIS5_SETIT; Uncharacterized protein
STRINGSi014144m1e-104(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.16e-88myb domain protein 20
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]