PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462945759

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

bHLH

Protein Properties

Length: 146aa MW: 16258.4 Da PI: 8.6554

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462945759	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.2	3.1e-13	82	127	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k s a++L +Ave+Ik Lq 462945759 82 SIAERERRTRISEKLRKLQELVPNM----DKQTSTADMLDLAVEHIKGLQ 127 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.723	76	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.88E-16	79	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.67E-12	80	131	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.1E-15	81	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-10	82	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.1E-13	82	132	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
SGESSGGAAA SRSFSGGFSI VGPWEESRDI IATLGAYDPQ FNGAMTSSAL EMAGMDRYLQ 60 LQQDQVPFKV RAKRGCATHP RSIAERERRT RISEKLRKLQ ELVPNMDKQT STADMLDLAV 120 EHIKGLQSEL QNLKHEQEKC TCCRKR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462945759

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU954725	1e-113	EU954725.1 Zea mays clone 1479278 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808991.1	5e-87	transcription factor bHLH128-like
Swissprot	Q8H102	4e-48	BH128_ARATH; Transcription factor bHLH128
TrEMBL	A0A1E5USQ6	3e-93	A0A1E5USQ6_9POAL; Transcription factor bHLH128
STRING	Pavir.Aa01423.1.p	9e-91	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11531	31	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	2e-47	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]