PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462945927

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

WRKY

Protein Properties

Length: 539aa MW: 57534.6 Da PI: 5.5908

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462945927	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	105.2	3.4e-33	345	403	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k v++tYeg+Hnhe 462945927 345 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCSVRKHVERASHDLKSVITTYEGKHNHE 403 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.2E-37	330	405	IPR003657	WRKY domain
SuperFamily	SSF118290	5.1E-29	337	405	IPR003657	WRKY domain
PROSITE profile	PS50811	37.539	340	405	IPR003657	WRKY domain
SMART	SM00774	4.0E-38	345	404	IPR003657	WRKY domain
Pfam	PF03106	2.0E-25	346	403	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence Send to blast
MAGTSDHGSL MEDWMRPPTP SPRTLMSSFL NDDFSSGPFS NLFCDPGIKQ PLDRSEKSRQ 60 PVNSSEEVLA QAAKDTFQKD FPLEPNFFSA MQKSNSPSGL AERRAARAGF SVPKIDTSRV 120 GSSTVIRSPV SIPPGLSPAS LLESPVFLYN KTAQPSPTTG KLPFLMATDC NSIMPPAAKT 180 TDDCTFDNDE SNLQSNFIAV KDNTDERIIG QSDSMFDANH YSAREHVDGE TNQNLQGEGV 240 EARTAACLPV SMHGDASIME SQDAVDVSST LSNEEDERVT HGTVSAEGDG DDDETESKRR 300 KLDSLGTPPI ATAATTSAID MGAAASRAVR EPRVVVQTTS EVDILDDGYR WRKYGQKVVK 360 GNPNPRSYYK CTHPGCSVRK HVERASHDLK SVITTYEGKH NHEVPAARNS GQAGSSSGSA 420 TSAALGSSHR RQEPGQGNFS HFGGTAPFGS LVLPPRGHLG PAAGNFHFGM VPPGMGMPMP 480 HLGSLAPTKM IQSSSGLPRA NDARRAEGGA SVASELPTGK CSLISLPTDD EQAFFWSSD

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence Send to blast

MAGTSDHGSL MEDWMRPPTP SPRTLMSSFL NDDFSSGPFS NLFCDPGIKQ PLDRSEKSRQ  60
PVNSSEEVLA QAAKDTFQKD FPLEPNFFSA MQKSNSPSGL AERRAARAGF SVPKIDTSRV  120
GSSTVIRSPV SIPPGLSPAS LLESPVFLYN KTAQPSPTTG KLPFLMATDC NSIMPPAAKT  180
TDDCTFDNDE SNLQSNFIAV KDNTDERIIG QSDSMFDANH YSAREHVDGE TNQNLQGEGV  240
EARTAACLPV SMHGDASIME SQDAVDVSST LSNEEDERVT HGTVSAEGDG DDDETESKRR  300
KLDSLGTPPI ATAATTSAID MGAAASRAVR EPRVVVQTTS EVDILDDGYR WRKYGQKVVK  360
GNPNPRSYYK CTHPGCSVRK HVERASHDLK SVITTYEGKH NHEVPAARNS GQAGSSSGSA  420
TSAALGSSHR RQEPGQGNFS HFGGTAPFGS LVLPPRGHLG PAAGNFHFGM VPPGMGMPMP  480
HLGSLAPTKM IQSSSGLPRA NDARRAEGGA SVASELPTGK CSLISLPTDD EQAFFWSSD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-37	336	406	8	78	Probable WRKY transcription factor 4
2lex_A	1e-37	336	406	8	78	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269\|PubMed:21316593}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462945927

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004957146.1	0.0	probable WRKY transcription factor 2
Refseq	XP_022680444.1	0.0	probable WRKY transcription factor 2
Swissprot	Q9FG77	3e-55	WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBL	A0A1E5WJ69	0.0	A0A1E5WJ69_9POAL; Putative WRKY transcription factor 2
STRING	Si029342m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56270.1	1e-53	WRKY DNA-binding protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ueda M, et al. Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote. Genes Dev., 2017. 31(6): p. 617-627 [PMID:28404632] Lei R, et al. Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function. Plant J., 2017. 91(6): p. 962-976 [PMID:28635025]