PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462946023
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family G2-like
Protein Properties Length: 359aa    MW: 38088.4 Da    PI: 9.8924
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462946023genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.12.6e-30218273156
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                k+r++W+peLH+rFv a+++L G++ AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  462946023 218 KARRCWSPELHRRFVAALQRLRGPQAATPKQIRELMKVDGLTNDEVKSHLQKYRLH 273
                68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.238215275IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.2E-28215276IPR009057Homeodomain-like
SuperFamilySSF466891.03E-16216276IPR009057Homeodomain-like
TIGRFAMsTIGR015576.7E-25218273IPR006447Myb domain, plants
PfamPF002493.9E-6220271IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MTMGPEPAAR NKAEDLCAVA ARAVTDSLRA AVARSGAAER AARFEECVRS LEAEKAKMEV  60
FRRELPISVH LVADGRARAA PAGGGGGGRG GRGRRGGVAA AKRKAAPEGG KVEEADDKRS  120
WMSSAQLWSC GSRDDSTDNS NGVAGAKKPA HKVSHNAFMP LNGLAKSADA AEKPAAMPVP  180
DLSLSSQAID AACPAAPRAT RSAVTDARAQ CQQQAQRKAR RCWSPELHRR FVAALQRLRG  240
PQAATPKQIR ELMKVDGLTN DEVKSHLQKY RLHTRRASSD GGDQQAAMAL WSAPEQQYTT  300
SQHSTSQSGS PQGPLQLTVS SRAVSVTGGD SCDGDEEEDG KSESYSWEMQ QRATKSSSS
Cis-element ? help Back to Top
SourceLink
PlantRegMap462946023
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151221.11e-128myb family transcription factor EFM-like
TrEMBLA0A0A9CL961e-134A0A0A9CL96_ARUDO; Uncharacterized protein
STRINGPavir.Ca02525.1.p1e-129(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55823353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.17e-28G2-like family protein