PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462946026

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

G2-like

Protein Properties

Length: 205aa MW: 22103.5 Da PI: 8.0836

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462946026	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	94.2	1.1e-29	70	125	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peL ++Fv a+e+LGG++ AtPk+i+elmkv+gLt+++vkSHLQkYRl+ 462946026 70 KARRCWSPELRHQFVAALERLGGPQAATPKKIRELMKVDGLTIDEVKSHLQKYRLH 125 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.814	67	127	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-28	67	129	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.58E-17	68	128	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-24	70	125	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-7	72	123	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MTPLMVSNGF MPLNGLARST DAAEKPAAMP DPDLSLSSPA IDAACPATRR VTRSAVTGAG 60 AQRQQQAQKK ARRCWSPELR HQFVAALERL GGPQAATPKK IRELMKVDGL TIDEVKSHLQ 120 KYRLHTRRVS SDGGDQQSAP EQQNTTSQHS TSQSGSPQEP LQLTVSSRVV SVPGGDSCDG 180 DEEEDGKAES YSWEMQQRAT KSSSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-14	70	123	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-14	70	123	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-14	70	123	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-14	70	123	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462946026

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004963026.1	5e-78	transcription factor HHO3
TrEMBL	A0A0A9CL96	2e-92	A0A0A9CL96_ARUDO; Uncharacterized protein
STRING	Pavir.Ca02525.1.p	2e-77	(Panicum virgatum)
STRING	Pavir.Cb00438.1.p	4e-78	(Panicum virgatum)
STRING	Si022287m	2e-77	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5582	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	1e-25	G2-like family protein