PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462946074
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HD-ZIP
Protein Properties Length: 916aa    MW: 101685 Da    PI: 5.0764
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462946074genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.83.3e-1764119156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                +r ++++t++q++eLe++++k+ +p+a++ + L++k+gL+  qVk+WFqNrR + k
  462946074  64 KRVKRRHTPKQIQELEAAYQKCTHPDAKTQQALSSKIGLEILQVKFWFQNRRSQIK 119
                567789**********************************************9876 PP
2START105.58.6e-344446743206
                HHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS...........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT.... CS
      START   3 aeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv..........dsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg.... 88 
                a++a++++  +a+ +ep W    ++e    +++++++  +          +++ea +++g+v + +a+ v++l+d+  +W+e+++   +  vis      
  462946074 444 AQCAMEQFDMLATKGEPIWIVTTDGEVLANRVYQETT--FsmylgprpsdFKVEATKVTGMVRGSAADIVSILIDSD-RWSEMFP-GIIAGVISGEvilg 539
                5677888888888899999888844443333333322..133566666667**************************.*******.44555555557777 PP

                .......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE.........-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
      START  89 .......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvd.........seqkppesssvvRaellpSgiliepksnghskvtwvehvd 171
                       g +qlm+ael + sp vp R   f+Ry++ +++++wv++dvSvd         +++++p  +    ++llpSg+lie++sn ++kvtw+ h++
  462946074 540 smvapcdGLIQLMNAELWVQSPRVPnRTMQFLRYTEMKTDKKWVVMDVSVDgllgqnmnlNNNNNPVLATHTECRLLPSGCLIEDMSNDYCKVTWIVHAE 639
                7888999*******************************************96666655443444444889999*************************** PP

                --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
      START 172 lkgrlphwllrslvksglaegaktwvatlqrqcek 206
                ++  ++++++++l  sg+  ga +w+  lqrqce+
  462946074 640 YNNTTVPMMFKPLFFSGQGLGACRWLMSLQRQCES 674
                *********************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.23E-1650119IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-1656115IPR009057Homeodomain-like
PROSITE profilePS5007115.15961121IPR001356Homeobox domain
SMARTSM003892.0E-1463125IPR001356Homeobox domain
CDDcd000863.68E-1564119No hitNo description
PfamPF000461.1E-1464119IPR001356Homeobox domain
PROSITE patternPS00027096119IPR017970Homeobox, conserved site
PROSITE profilePS5084813.062217321IPR002913START domain
PROSITE profilePS5084832.297433677IPR002913START domain
SMARTSM002342.6E-5441674IPR002913START domain
CDDcd088751.16E-67444673No hitNo description
SuperFamilySSF559611.05E-21445674No hitNo description
PfamPF018522.9E-26445674IPR002913START domain
SuperFamilySSF559611.1E-6755884No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 916 aa     Download sequence    Send to blast
MMNQGKEVHN KDGDLTVAND TTNQQKNDRG DEINALIGLQ DQDCFSTKDD DDEDYCPMRE  60
MSSKRVKRRH TPKQIQELEA AYQKCTHPDA KTQQALSSKI GLEILQVKFW FQNRRSQIKM  120
KAHVQENNVL REDYDALLAD NFSLQEAMLM QSCFKCGAKP TPTKLPLDKQ HLLLENERLN  180
NEFLRASAIL NMLYCVETPF GRPVSTSLLP VPALSGGEGE RDILLRHAQC AMEQFDMLAT  240
KGEPIWIVTT DGEVLANRVY QETTFSMYLG PRPSDFKVEA TKVTGMVRGS AADIVSILID  300
SDRWSEMFPG IIAGVISGEV ILGSMVAPCD GLIQLMKAHV QENNVLREDY DALLADNFSL  360
QEAMLMQSCF KCGAKPTPTK LPLDKQHLLL ENERLNNEFL RASAILNMLY CVETPFGRPV  420
STSLLPVPAL SGGEGERDIL LRHAQCAMEQ FDMLATKGEP IWIVTTDGEV LANRVYQETT  480
FSMYLGPRPS DFKVEATKVT GMVRGSAADI VSILIDSDRW SEMFPGIIAG VISGEVILGS  540
MVAPCDGLIQ LMNAELWVQS PRVPNRTMQF LRYTEMKTDK KWVVMDVSVD GLLGQNMNLN  600
NNNNPVLATH TECRLLPSGC LIEDMSNDYC KVTWIVHAEY NNTTVPMMFK PLFFSGQGLG  660
ACRWLMSLQR QCESLHARDA PVGINTATMS VKGRRSILEM SQRMLGGFYA AVSGPINQRQ  720
KDIREWHSGS SDTNAMGIVA VVRMVTWQNA TNMATEPIGL VLSATATFWL PCTTPKCVFD  780
YVCDLKNRGE WDFLINSAKV KELVSITTGH QDSDVVSVLY PDVTYGTNGN MMILQEAYID  840
ESSALVVYSP IDEISIGAIM NGGDHTSVFL LPSGFAILPD GCSKAHRTRV DAPGSSNTLL  900
TTIMPKGPFS QSPSRL
Cis-element ? help Back to Top
SourceLink
PlantRegMap462946074
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLK4A2G80.0K4A2G8_SETIT; Uncharacterized protein
STRINGSi033066m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83241742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.13e-92protodermal factor 2