PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462946594
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 524aa    MW: 56899.8 Da    PI: 6.7663
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462946594genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.62.3e-32130186259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                +DgynWrKYGqK+vk+se+prsYY+Ct+++Cpvkkkvers+ +++++ei+Y+g+H h+
  462946594 130 EDGYNWRKYGQKQVKNSEHPRSYYKCTHPNCPVKKKVERSQ-EGHITEIVYKGSHSHP 186
                8****************************************.***************7 PP
2WRKY1048e-33342400159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC v+k+ver+++d k v++tYeg+Hnhe
  462946594 342 LDDGYRWRKYGQKVVKGNPNPRSYYKCTQAGCGVRKHVERASNDLKSVITTYEGKHNHE 400
                59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.3E-29126188IPR003657WRKY domain
SuperFamilySSF1182905.1E-26128188IPR003657WRKY domain
SMARTSM007743.5E-36129187IPR003657WRKY domain
PROSITE profilePS5081122.228130188IPR003657WRKY domain
PfamPF031063.9E-25130186IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-36327402IPR003657WRKY domain
SuperFamilySSF1182901.31E-28334402IPR003657WRKY domain
PROSITE profilePS5081137.619337402IPR003657WRKY domain
SMARTSM007747.8E-37342401IPR003657WRKY domain
PfamPF031061.7E-25343400IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009555Biological Processpollen development
GO:0009846Biological Processpollen germination
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MAGTNNRGAL MEDWMLPSPS PRTLMSSFWN EEFSSGPFSN IFSENCSNKI QDGASVVHQD  60
HSSANDNQRG ESSLQSNSGG TKDVTDTNLV KPKTCDSMLD NDHPSPADEQ ESEETENGEY  120
SSGPVTAPAE DGYNWRKYGQ KQVKNSEHPR SYYKCTHPNC PVKKKVERSQ EGHITEIVYK  180
GSHSHPLPPP NRRSNVPMSH SSDLQADCLE NFGSKPGHST APLQGSTPNG HIHDVHSGVL  240
ETKLSGSLTT TEIADTSVTE SREAVDVSST VSSSDKDEKA THGTIPSTFD RDEDETESKR  300
RKMDVSAANN TTTSTIDMAA MASRAVREPR IIVQTTSEVD ILDDGYRWRK YGQKVVKGNP  360
NPRSYYKCTQ AGCGVRKHVE RASNDLKSVI TTYEGKHNHE VPAARNSSGH PSSGAAPQVT  420
SLHQRPQLAQ ASIAQFGGIA AYGSVCLPSQ LSAASGGFCF GMIPPGMALQ VPSPGTTMPV  480
HIPGHPPAMQ HYTGLMLPRG EMKVNHEVQP VAARTVSQTY QQRM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-37130403878Probable WRKY transcription factor 4
2lex_A2e-37130403878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462946594
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820553.10.0probable WRKY transcription factor 2
RefseqXP_025820554.10.0probable WRKY transcription factor 2
RefseqXP_025820555.10.0probable WRKY transcription factor 2
RefseqXP_025820556.10.0probable WRKY transcription factor 2
SwissprotO655907e-91WRK34_ARATH; Probable WRKY transcription factor 34
SwissprotQ9FG772e-90WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A2T7D8Y40.0A0A2T7D8Y4_9POAL; Uncharacterized protein
STRINGPavir.J35763.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26440.12e-91WRKY DNA-binding protein 34
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Hu X, et al.
    Proteasome-mediated degradation of FRIGIDA modulates flowering time in Arabidopsis during vernalization.
    Plant Cell, 2014. 26(12): p. 4763-81
    [PMID:25538183]
  4. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  5. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]