PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462946823
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family M-type_MADS
Protein Properties Length: 216aa    MW: 24292.6 Da    PI: 5.5892
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462946823genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.22.1e-28958150
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
               krien++nrqvtfskRrng++KKA+ELSvLCd++va+++fs++g+l  +s
  462946823  9 KRIENNTNRQVTFSKRRNGLIKKAYELSVLCDIDVALLMFSPSGRLSHFS 58
               79********************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.9E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.73161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-30278IPR002100Transcription factor, MADS-box
CDDcd002652.10E-38275No hitNo description
PRINTSPR004041.6E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.8E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-263859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MGRVKLQIKR IENNTNRQVT FSKRRNGLIK KAYELSVLCD IDVALLMFSP SGRLSHFSGR  60
HGVEDVVLRY MNLPEHDRGD PGALNEKIEE IQQEIYSCQQ QLHISEERLR FFEPDPAMFG  120
STSEIDGSEK ILMDVLARVV ERKNYLLSNH MAPFEATAPG IKAEDAAEMF VHPERVEGMG  180
TFAGDAALWA ADEGSSPGHQ MFGSSDPMIY LRHVPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-19187191MEF2C
5f28_B3e-19187191MEF2C
5f28_C3e-19187191MEF2C
5f28_D3e-19187191MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462946823
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693352e-65KF469335.1 Brachypodium distachyon MADS-box transcription factor 41 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006659532.11e-112PREDICTED: agamous-like MADS-box protein AGL104
SwissprotQ9LM461e-58AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLA0A3S6KAG01e-120A0A3S6KAG0_BAMML; MADS62
STRINGLPERR08G16000.11e-110(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49533360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.15e-61AGAMOUS-like 104
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]