PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462946945
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GRAS
Protein Properties Length: 315aa    MW: 35162.4 Da    PI: 5.0779
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462946945genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS301.52e-921330678369
       GRAS  78 laalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgv 174
                + a++++++++P+ kf+hltaNqaIlea+  ++++Hi+Df+i qG+QW+aLlqaLa+Rpeg+p ++Ri gv sp  g   + +l +t  rL++fA+ lgv
  462946945  13 AIAQQTLNDACPYSKFAHLTANQAILEATGAATKIHIVDFGIVQGIQWAALLQALATRPEGKPsRIRISGVPSPYLGskPAASLAATSARLRDFAKLLGV 112
                568999*****************************************************887769********9988889999***************** PP

       GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                +fef + + + +++l+ +++ ++p+Ea+aVn++lql++ll   ++++++ ++vL+l kslsP vv++ e e+++n++ F++rf++a+ yy+++f+sl++ 
  462946945 113 DFEFVP-LLRPVHELDRSDFLIEPDEAVAVNFMLQLYHLL---GDSDEPVRQVLRLAKSLSPSVVTLGEYEVSLNRAGFVDRFANAMCYYMSVFESLDVA 208
                ******.599******************************...66666777************************************************* PP

       GRAS 275 lpreseerikvErellgreivnvva.cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvs 369
                ++r+s er+ vEr ++g++i+ +v   egaer+ r+ + ++W+  +e +GF+p++ls++a++qa+lll +++ +  y++ e++ +++ l W++rpL++
  462946945 209 MARDSPERVRVERCMFGERIQRAVGpEEGAERTDRMASSKEWQTLMEWCGFEPIHLSNYAMSQADLLLWNYDsKYKYSLVEQQPAFLsLAWEKRPLLT 306
                ************************8356899*****************************************77789999**999999********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.5741289IPR005202Transcription factor GRAS
PfamPF035147.0E-9013306IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MAYMCADSGN LMAIAQQTLN DACPYSKFAH LTANQAILEA TGAATKIHIV DFGIVQGIQW  60
AALLQALATR PEGKPSRIRI SGVPSPYLGS KPAASLAATS ARLRDFAKLL GVDFEFVPLL  120
RPVHELDRSD FLIEPDEAVA VNFMLQLYHL LGDSDEPVRQ VLRLAKSLSP SVVTLGEYEV  180
SLNRAGFVDR FANAMCYYMS VFESLDVAMA RDSPERVRVE RCMFGERIQR AVGPEEGAER  240
TDRMASSKEW QTLMEWCGFE PIHLSNYAMS QADLLLWNYD SKYKYSLVEQ QPAFLSLAWE  300
KRPLLTEGLD RVIGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A0.01230676370GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (By similarity). Binds DNA in vitro (PubMed:27081181). {ECO:0000250|UniProtKB:A0A024B7I0, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:27081181}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462946945
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981941.10.0scarecrow-like protein 4
SwissprotQ53K160.0SCL7_ORYSJ; SCARECROW-LIKE protein 7
TrEMBLA0A0A9GFZ00.0A0A0A9GFZ0_ARUDO; Uncharacterized protein
TrEMBLA0A3L6TKB60.0A0A3L6TKB6_PANMI; Uncharacterized protein
STRINGSi034954m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85693748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-123GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li S, et al.
    Crystal Structure of the GRAS Domain of SCARECROW-LIKE7 in Oryza sativa.
    Plant Cell, 2016. 28(5): p. 1025-34
    [PMID:27081181]