PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462948041
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 306aa    MW: 33551.2 Da    PI: 8.0433
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462948041genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1031.6e-322480259
               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
               dDgynWrKYGqK vkg e+prsYY+Ct+++Cpvkkkversa d+++++i+Y+g+Hnh+
  462948041 24 DDGYNWRKYGQKAVKGGEYPRSYYKCTHSSCPVKKKVERSA-DGQITQIIYRGQHNHH 80
               8****************************************.***************7 PP
2WRKY105.13.7e-33192250159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC vkk++ers++dpk+v++tYeg+H h+
  462948041 192 LDDGYRWRKYGQKVVKGNPHPRSYYKCTYQGCDVKKHIERSSQDPKAVITTYEGKHSHD 250
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-291582IPR003657WRKY domain
PROSITE profilePS5081124.4431882IPR003657WRKY domain
SuperFamilySSF1182904.84E-262182IPR003657WRKY domain
SMARTSM007746.9E-342381IPR003657WRKY domain
PfamPF031065.5E-252480IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-36179252IPR003657WRKY domain
SuperFamilySSF1182901.14E-29184252IPR003657WRKY domain
PROSITE profilePS5081137.172187252IPR003657WRKY domain
SMARTSM007741.0E-38192251IPR003657WRKY domain
PfamPF031068.4E-26193250IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
NSNIQSNEIS QPQTSALTAD KPADDGYNWR KYGQKAVKGG EYPRSYYKCT HSSCPVKKKV  60
ERSADGQITQ IIYRGQHNHH RPPKRRSKDG GELLNEGDDF RENEDAPTRS EPGSHDHSGK  120
VEASNDGPAG PSMSRRGEGD DHLSGSSDSE DEGDDESRAG NGDAGPANAN RRHVPTPAQR  180
IIVQTTSEVD LLDDGYRWRK YGQKVVKGNP HPRSYYKCTY QGCDVKKHIE RSSQDPKAVI  240
TTYEGKHSHD VPASRNSSHA AANVNASSSS SVAHRGQISV SSRRRSDLQN ASSASSVLLK  300
EENEIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-3924253878Probable WRKY transcription factor 4
2lex_A3e-3924253878Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18085RPPKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462948041
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002467677.21e-180probable WRKY transcription factor 4
SwissprotQ9ZQ707e-86WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A0A9G7H51e-179A0A0A9G7H5_ARUDO; Uncharacterized protein
STRINGSb01g032120.11e-178(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.13e-68WRKY family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]