PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462948134

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

C2H2

Protein Properties

Length: 223aa MW: 23834.3 Da PI: 4.5131

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462948134	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00058	188	204	1	17
EEETTTTEEESSHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLk 17 ++Cp C k+F+r n++ 462948134 188 FSCPVCYKTFNRYNNMQ 204 89*********988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	5.0E-4	188	203	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MGDPYTNFLR GYYSHFIPPS NPPPVSSSSS FSSYATSYLH PPPPSPPIRE ALPLLSSLTP 60 PSTTSPPRQH RDEDVQDQKD NCKLTITSCS NSEEAADQAG EVTVALHIGL PSPGPSESAA 120 AAAAVGSGGN QQEAAEEGRS QQEEGGGDEE EGEDAMAVGC ASIGIGRLTK GQYWIPTPSQ 180 ILIGPTQFSC PVCYKTFNRY NNMQVNFAHR IIDPLFFFPR ACA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462948134

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243261	1e-57	AC243261.1 Panicum virgatum clone PV_ABa107-B06, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002437277.1	2e-71	zinc finger protein WIP2
TrEMBL	C5Z5T1	4e-70	C5Z5T1_SORBI; Uncharacterized protein
STRING	Sb10g024040.1	6e-71	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15363	5	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	4e-21	C2H2 family protein