PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462949010

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

SBP

Protein Properties

Length: 273aa MW: 29497.1 Da PI: 9.7832

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462949010	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	46.9	7.1e-15	16	46	48	78
SEEETTT--SS--S-STTTT-------S--- CS SBP 48 rfhelsefDeekrsCrrrLakhnerrrkkqa 78 rfh l efDe+krsCr+rL++hn+rrrk+q+ 462949010 16 RFHLLAEFDEAKRSCRKRLDGHNRRRRKPQP 46 9***************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	12.862	1	44	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	6.9E-5	15	31	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	9.1E-8	15	43	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.71E-12	16	49	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MPKTQKVSAT RTVRKRFHLL AEFDEAKRSC RKRLDGHNRR RRKPQPDPMT SASFITSQQG 60 TRFSPFATPR PDANWPGIIK TEESPYYTHQ IPLSTSNMQH FVGSTSAYTK EGRRFPFLQE 120 GGINFATGVV LEAASVCQPL LKTVAAPLDS GGGSGSSKMF SEGLTRVLDS DCALSLLSAP 180 ANSSGIDVGR MVRPAEHVPM AQPLVSGLQF GSSSWFSRPQ AAVSAVTTAG LESEQMNTVM 240 GANDNDMNYN GMFHVGGEGS SNGTSSSLPF SWQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	26	43	KRSCRKRLDGHNRRRRKP

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462949010

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020194874.1	1e-131	squamosa promoter-binding-like protein 16
Swissprot	Q6YZE8	1e-113	SPL16_ORYSJ; Squamosa promoter-binding-like protein 16
TrEMBL	A0A0A9K1H0	1e-153	A0A0A9K1H0_ARUDO; Uncharacterized protein
STRING	Pavir.J28847.1.p	1e-131	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1755	37	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	3e-16	SBP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Wang SS,Wang CS,Tseng TH,Hou YL,Chen KY High-resolution genetic mapping and candidate gene identification of the SLP1 locus that controls glume development in rice. Theor. Appl. Genet., 2011. 122(8): p. 1489-96 [PMID:21327937] Wang S, et al. Control of grain size, shape and quality by OsSPL16 in rice. Nat. Genet., 2012. 44(8): p. 950-4 [PMID:22729225] Wang S, et al. The OsSPL16-GW7 regulatory module determines grain shape and simultaneously improves rice yield and grain quality. Nat. Genet., 2015. 47(8): p. 949-54 [PMID:26147620] Wang Y, et al. A comprehensive meta-analysis of plant morphology, yield, stay-green, and virus disease resistance QTL in maize (Zea mays L.). Planta, 2016. 243(2): p. 459-71 [PMID:26474992] Lee CM, et al. Influence of Multi-Gene Allele Combinations on Grain Size of Rice and Development of a Regression Equation Model to Predict Grain Parameters. Rice (N Y), 2015. 8(1): p. 33 [PMID:26519289] Bessho-Uehara K, et al. Loss of function at RAE2, a previously unidentified EPFL, is required for awnlessness in cultivated Asian rice. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(32): p. 8969-74 [PMID:27466405]