PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462949177

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

C2H2

Protein Properties

Length: 407aa MW: 43617.8 Da PI: 8.6064

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462949177	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.5	5e-05	175	198	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+dC+++F ++L+ H t H 462949177 175 FPCTDCDEVFGKAESLELHRATrH 198 89******************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.224	175	203	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	177	198	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	3.55E-16	200	406	No hit	No description
Gene3D	G3DSA:3.90.228.10	1.2E-9	203	405	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MPCPPMDAVR KQGMGAAKEM NRGAGKKKPS RSSWMAMGLY YPSSSSSGKS RGQPAMAVEA 60 GNNGDDEKSN GKKKRSISIS RSMTCAGSIC CTKESSVMNR DAGAGRSASS RSLKVPDDAA 120 AISAMSRDLV VVAAVIGALV AAVLVRGVLL PRKLSGCYEC HSVFDPKNLA AAAAFPCTDC 180 DEVFGKAESL ELHRATRHAV SELEPLDTSR NIVEIIFQSS WLRKQAPVCK IERILKVQSS 240 DRTVKRFEQY KESIKEKASN GEGKKSPRCV ADGNELLRFY CTTFTCELGS GGGTALCQAA 300 SAQCKLCGII RDGFRVDGEG RIATMATSGR AHDMAQVSSD SGEKRAMLVC RVVAGRVKRD 360 ADTKSSEDSD CDSVSPFSEG VYSDLDELFV FNPRAILPCF VVIYSGY

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MPCPPMDAVR KQGMGAAKEM NRGAGKKKPS RSSWMAMGLY YPSSSSSGKS RGQPAMAVEA  60
GNNGDDEKSN GKKKRSISIS RSMTCAGSIC CTKESSVMNR DAGAGRSASS RSLKVPDDAA  120
AISAMSRDLV VVAAVIGALV AAVLVRGVLL PRKLSGCYEC HSVFDPKNLA AAAAFPCTDC  180
DEVFGKAESL ELHRATRHAV SELEPLDTSR NIVEIIFQSS WLRKQAPVCK IERILKVQSS  240
DRTVKRFEQY KESIKEKASN GEGKKSPRCV ADGNELLRFY CTTFTCELGS GGGTALCQAA  300
SAQCKLCGII RDGFRVDGEG RIATMATSGR AHDMAQVSSD SGEKRAMLVC RVVAGRVKRD  360
ADTKSSEDSD CDSVSPFSEG VYSDLDELFV FNPRAILPCF VVIYSGY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462949177

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025828324.1	0.0	uncharacterized protein LOC112903299
TrEMBL	A0A2T7CKL1	0.0	A0A2T7CKL1_9POAL; Uncharacterized protein
STRING	Sb05g004260.1	1e-165	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2633	38	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	5e-81	C2H2-like zinc finger protein