PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462949355

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

C2H2

Protein Properties

Length: 164aa MW: 18502 Da PI: 9.5997

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462949355	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.1	4.1e-07	23	45	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cg+ F r nL+ H r+H 462949355 23 YVCEICGQGFQRDQNLQMHRRRH 45 9*********************9 PP
2	zf-C2H2	13.6	0.0002	79	100	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C C+k + +s++k H++t+ 462949355 79 ACARCSKAYAVHSDYKAHLKTC 100 6*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.07E-5	18	46	No hit	No description
PROSITE profile	PS50157	11.635	23	45	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0032	23	45	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.4E-6	23	45	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	25	45	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.6E-4	69	99	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	230	78	105	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MGADPDAEVV SLSPRTLLES DRYVCEICGQ GFQRDQNLQM HRRRHKPSCL HHDPAHALGD 60 LVGIKKHFRR KHSGHRQWAC ARCSKAYAVH SDYKAHLKTC GTRGHTCDCG RVFSRYGTIH 120 TYDAANTALP HTLIRSTNHL ISHLVLTIPS QANHQIQPSN KQLV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-15	74	135	3	64	Zinc finger protein JACKDAW
5b3h_F	2e-15	74	135	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269\|PubMed:16813575, ECO:0000269\|PubMed:18259878, ECO:0000269\|PubMed:24039602, ECO:0000269\|PubMed:9210330}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462949355

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by auxin. {ECO:0000269\|PubMed:24039602}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004585	6e-83	AP004585.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0470B03.
GenBank	AP005308	6e-83	AP005308.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0047B10.
GenBank	AP006461	6e-83	AP006461.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0104B02.
GenBank	AP014964	6e-83	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBank	AP014965	6e-83	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBank	CP012617	6e-83	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
GenBank	KU494020	6e-83	KU494020.1 Hordeum vulgare subsp. vulgare broad leaf 1 (BLF1) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022679694.1	9e-73	protein indeterminate-domain 16 isoform X1
Swissprot	F4IPE3	2e-68	IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBL	A0A453KYW3	6e-72	A0A453KYW3_AEGTS; Uncharacterized protein
TrEMBL	K3ZSZ6	1e-71	K3ZSZ6_SETIT; Uncharacterized protein
STRING	Pavir.Fa00691.1.p	9e-73	(Panicum virgatum)
STRING	Si029726m	2e-72	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1051	38	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	7e-71	C2H2-like zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kim JY,Ryu JY,Baek K,Park CM High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis. New Phytol., 2016. 209(1): p. 265-79 [PMID:26256266] Ryu JY,Kim JY,Park CM Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis. Plant Signal Behav, 2015. 10(11): p. e1093715 [PMID:26452406] Qu Y, et al. Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis. J. Exp. Bot., 2017. 68(17): p. 4851-4867 [PMID:28992128] Shi H, et al. Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17. J. Pineal Res., 2018. 65(2): p. e12494 [PMID:29607541]