PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462949373
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 386aa    MW: 43095 Da    PI: 4.4926
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462949373genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.93.5e-11130176147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r++W+teE+ +++++++ +G g Wk+I+ +    +t+ q+ s+ +ky
        462949373 130 RQKWSTEEHRQFLHGIECFGRGAWKAISMYAVPSKTPAQLASHAHKY 176
                      89****************************999************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.861125181IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-9125182IPR009057Homeodomain-like
SMARTSM007178.6E-8129179IPR001005SANT/Myb domain
SuperFamilySSF466892.17E-12129182IPR009057Homeodomain-like
PfamPF002494.1E-8130176IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.5E-10130179IPR006447Myb domain, plants
CDDcd001673.36E-7132177No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MGANDIHVWK TFEEKYFKSF LCVATSENPS DRMEVLAERF PAKTIQQPND QCFDAFGDIL  60
CGEIDVEPIS NGATSDSSDW YNLLGEDTLD SVLGPSVQVP LNQPSKQLMV KAAGDRVAIK  120
KPRRKSAVRR QKWSTEEHRQ FLHGIECFGR GAWKAISMYA VPSKTPAQLA SHAHKYFKRI  180
EKNEQNDKRQ RYLINGAKPV NQDLNNIARS GTEPEKVKPT ESSIPPATPT EDMDFLDDLT  240
FLDDMNFGED LSFLDDMNFL DDLVQDMPTF GQASNNATNV ARQMTLNNDT PGSLQWEALS  300
TCPTTEQGCI LLDQTEGISA DTRTGPSYGQ SLVTDNQIRK DNIALPGVFT AQTPPEVLNY  360
GQGDTMQQTS QESNQYNLFP TMPSPF
Cis-element ? help Back to Top
SourceLink
PlantRegMap462949373
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1975668
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.18e-16MYB family protein