PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462950068

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

NAC

Protein Properties

Length: 164aa MW: 19146 Da PI: 11.0807

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462950068	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	147.6	6.5e-46	10	130	1	120
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 +ppGfrFhPtdeel+ +yLkkk+ +k++l evikevd++k+ePw+L++ ++ + ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + + + 462950068 10 VPPGFRFHPTDEELLLYYLKKKIGFEKFDL-EVIKEVDLNKIEPWELQErcRIGSaPQNEWYFFSHKDRKYPTGSRTNRATTAGFWKATGRDKCIRT-SY 107 69**************************.99**********963433332566*********************************9.89 PP NAM 98 elvglkktLvfykgrapkgektd 120 +++g++ktLvfy+grap+g+ktd 462950068 108 RKIGMRKTLVFYRGRAPHGQKTD 130 99*****************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-46	5	130	IPR003441	NAC domain
PROSITE profile	PS51005	42.03	10	161	IPR003441	NAC domain
Pfam	PF02365	1.1E-21	11	125	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MAAFSSSNGV PPGFRFHPTD EELLLYYLKK KIGFEKFDLE VIKEVDLNKI EPWELQERCR 60 IGSAPQNEWY FFSHKDRKYP TGSRTNRATT AGFWKATGRD KCIRTSYRKI GMRKTLVFYR 120 GRAPHGQKTD LDHARVPPRG GRRRAGRHQR KAARLISLHM HVKS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-41	10	130	17	134	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-41	10	130	17	134	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-41	10	130	17	134	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-41	10	130	17	134	NO APICAL MERISTEM PROTEIN
3swm_A	2e-41	10	130	20	137	NAC domain-containing protein 19
3swm_B	2e-41	10	130	20	137	NAC domain-containing protein 19
3swm_C	2e-41	10	130	20	137	NAC domain-containing protein 19
3swm_D	2e-41	10	130	20	137	NAC domain-containing protein 19
3swp_A	2e-41	10	130	20	137	NAC domain-containing protein 19
3swp_B	2e-41	10	130	20	137	NAC domain-containing protein 19
3swp_C	2e-41	10	130	20	137	NAC domain-containing protein 19
3swp_D	2e-41	10	130	20	137	NAC domain-containing protein 19
4dul_A	2e-41	10	130	17	134	NAC domain-containing protein 19
4dul_B	2e-41	10	130	17	134	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:20197506}.
UniProt	Transcription activator. Together with SMB and BRN2, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:20197506}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462950068

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU971542	0.0	EU971542.1 Zea mays clone 366845 NAC domain-containing protein 76 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015691469.1	3e-93	PREDICTED: LOW QUALITY PROTEIN: protein BEARSKIN2-like
Refseq	XP_025824150.1	2e-92	protein BEARSKIN1-like
Swissprot	Q9C878	3e-80	BRN1_ARATH; Protein BEARSKIN1
Swissprot	Q9SV87	4e-80	BRN2_ARATH; Protein BEARSKIN2
TrEMBL	A0A0D3FW98	3e-92	A0A0D3FW98_9ORYZ; Uncharacterized protein
TrEMBL	A0A2S3I6V2	4e-91	A0A2S3I6V2_9POAL; Uncharacterized protein
TrEMBL	A0A2T7CVD3	8e-91	A0A2T7CVD3_9POAL; Uncharacterized protein
STRING	Sb06g017720.1	2e-91	(Sorghum bicolor)
STRING	OBART04G13830.1	5e-93	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9297	30	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33280.1	3e-75	NAC domain containing protein 15

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]