PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462950116
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 637aa    MW: 69779.1 Da    PI: 6.872
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462950116genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.52.8e-33153209259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers+ d++++ei+Y+g+Hnh 
  462950116 153 DDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSQ-DGQITEIVYKGTHNHA 209
                8****************************************.***************7 PP
2WRKY105.82.3e-33308366159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+vkg+++prsYY+Ct+a+Cpv+k+ver+++d ++v++tYeg+Hnh+
  462950116 308 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTANCPVRKHVERASHDLRAVITTYEGKHNHD 366
                59********************************************************7 PP
3WRKY105.82.3e-33480538159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+vkg+++prsYY+Ct+a+Cpv+k+ver+++d ++v++tYeg+Hnh+
  462950116 480 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTANCPVRKHVERASHDLRAVITTYEGKHNHD 538
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-28144211IPR003657WRKY domain
PROSITE profilePS5081123.755147211IPR003657WRKY domain
SuperFamilySSF1182904.58E-25148211IPR003657WRKY domain
SMARTSM007741.1E-35152210IPR003657WRKY domain
PfamPF031062.3E-25153208IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.3E-37293368IPR003657WRKY domain
SuperFamilySSF1182902.22E-29300368IPR003657WRKY domain
PROSITE profilePS5081137.883303368IPR003657WRKY domain
SMARTSM007742.0E-38308367IPR003657WRKY domain
PfamPF031061.6E-25309366IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.3E-37465540IPR003657WRKY domain
SuperFamilySSF1182902.22E-29472540IPR003657WRKY domain
PROSITE profilePS5081137.883475540IPR003657WRKY domain
SMARTSM007742.0E-38480539IPR003657WRKY domain
PfamPF031061.6E-25481538IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0010120Biological Processcamalexin biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0010508Biological Processpositive regulation of autophagy
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
SFFNIPGGLN PADFLDSPIL LTSSLFPSPT AGAFASQQFS WMQTQAVEQD GSKEEQRQQS  60
FPDFSFQTAP TSQEAVRTTT TTFQPPIQPA SLGEEAYTSQ QQQPWGYQQQ QPAMDTNQAS  120
FSAPFQATSS DATAMAPHAA QGYSQQSQRR SSDDGYNWRK YGQKQVKGSE NPRSYYKCTF  180
PSCPTKKKVE RSQDGQITEI VYKGTHNHAK PQNTRRNNSG AAQLLVQGGG DASEHSFGGT  240
PVGTPENSSA SFGEDEAGNA GGEEFDEDEP DSKRWRKESE GEGMSMAGNR TVREPRVVVQ  300
TMSDIDILDD GYRWRKYGQK VVKGNPNPRS YYKCTTANCP VRKHVERASH DLRAVITTYE  360
GKHNHDVPAA RGSAALYRPA PPPPPADNGA GSSGHHYLGG GGDASEHSFG GTPVGTPENS  420
SASFGEDEAG NAGGEEFDED EPDSKRWRKE SEGEGMSMAG NRTVREPRVV VQTMSDIDIL  480
DDGYRWRKYG QKVVKGNPNP RSYYKCTTAN CPVRKHVERA SHDLRAVITT YEGKHNHDVP  540
AARGSAALYR PAPPPPPADN GAGSSGQQRR RRAAVRPRSS FGLQQGAAGF GGFSGFDNPM  600
GSYMSQHQQQ QRQNDAMHAS RAKEEPREDM FFQQTMM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-35140541578Probable WRKY transcription factor 4
2lex_A9e-35140541578Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00299DAPTransfer from AT2G38470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462950116
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3576711e-175AK357671.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1058P10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970421.30.0WRKY transcription factor WRKY24
SwissprotQ6IEQ70.0WRK24_ORYSJ; WRKY transcription factor WRKY24
TrEMBLA0A1E5WCJ00.0A0A1E5WCJ0_9POAL; Putative WRKY transcription factor 33
STRINGPavir.Eb03590.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29923687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-83WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  3. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  4. Zhang L, et al.
    Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
    Plant Sci., 2015. 236: p. 214-22
    [PMID:26025535]