PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462950509
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 250aa    MW: 27816.7 Da    PI: 10.3164
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462950509genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.21.6e-33134191259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                +Dgy+WrKYGqK vk+s++prsYYrCt+++Cpvkk+vers +dp vv++tYeg+H+h+
  462950509 134 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQRCPVKKRVERSYQDPAVVITTYEGKHTHP 191
                8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-35118193IPR003657WRKY domain
SuperFamilySSF1182906.41E-30125193IPR003657WRKY domain
PROSITE profilePS5081132.535128193IPR003657WRKY domain
SMARTSM007746.1E-39133192IPR003657WRKY domain
PfamPF031061.1E-26134191IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MSSSGEFHFH DELAPLFAQR PAPGDMMMQQ QQAPPGSWFA DFLQGPMAPD YDLLCRALDL  60
PLVAAEDVVK RELVVDTGGG GARTPSGGGT APVTPNTTSS MSVSAAKAKG GKGEKRQRQP  120
RFAFMTKSEV DHLEDGYRWR KYGQKAVKNS PYPRSYYRCT TQRCPVKKRV ERSYQDPAVV  180
ITTYEGKHTH PIPATLRGSA HLLAAAHHPH FRMPPPPXXX XXXXXXXXXX XXXSPCRRRR  240
WPPTALLPGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-29123194778Probable WRKY transcription factor 4
2lex_A8e-29123194778Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00168DAPTransfer from AT1G29860Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462950509
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1008331e-124FP100833.1 Phyllostachys edulis cDNA clone: bphyem102p01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458273.19e-87probable WRKY transcription factor 48
TrEMBLA0A3L6FPR05e-88A0A3L6FPR0_MAIZE; Putative WRKY transcription factor 28
STRINGSb03g030480.14e-86(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.11e-50WRKY DNA-binding protein 28