PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462951276
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 1521aa    MW: 169243 Da    PI: 9.1204
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462951276genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.9e-07150186341
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 
                       W+++E e+++ a +++G++ W+++a  +   Rt +++ 
        462951276 150 QWSKDELERFYGAYRKYGKD-WRKVAGAIR-DRTSEMVE 186
                      6*****************99.*********.***98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.07E-9145194IPR009057Homeodomain-like
PROSITE profilePS512939.479146197IPR017884SANT domain
SMARTSM007170.0056147195IPR001005SANT/Myb domain
PfamPF002491.2E-5150190IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-4150190IPR009057Homeodomain-like
CDDcd001671.22E-4151193No hitNo description
SMARTSM011352.6E-55695796IPR033471DIRP domain
PfamPF065841.1E-31695795IPR033471DIRP domain
SMARTSM011352.6E-559071008IPR033471DIRP domain
PfamPF065841.1E-319071007IPR033471DIRP domain
SMARTSM011355.9E-1910141099IPR033471DIRP domain
PfamPF065847.5E-1710381098IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1521 aa     Download sequence    Send to blast
RNQLPFVPLA IPFRSSHPPA PLRCEAAPPS SPVSGRAGGC RPCIADSPSP PSTRADGLPS  60
RIASYPEEPL SSGNSGTTGS SCPQFSRFIG PGDQGHSLPV VRFSMASSRK VRNANKRYAK  120
INEDWQDKDD TNVHKSKVRK KKISDMLGSQ WSKDELERFY GAYRKYGKDW RKVAGAIRDR  180
TSEMVEALYN MNKDGSNSDR ESNDSPKASR KPQKRGRAKF QSVSKTSDTC YPDLLQSQPA  240
SSSYGCLSLL KKKRSGDLLI GNRPRAVGKR TPRVPVSSMY YRDDRGVADR RAKADANNGD  300
DEGAHVAALA LAEVCQRGGS PQVSETHGRS GDRMFLSPVK SSDRKNADSE MGSSKLHGFH  360
LDADYPEGSL GSREAETGDY TKGASFFMTN EGSASGKPQK KVKKSQKRRK KAARKTGDQF  420
EDDREACSGT EEGNSARKAK EESDLEALGW PSTSNKRSRQ LFFGDESSAL DALHTLADLS  480
VNILQPSSVV ESESSAQIKD ENKDDDSDEK PSMPAAVSVY EQKIGSKSTA RKAKRQSETA  540
NTEVVTRKKA KLVKDPRHDG SSTDVKQQAC TCGVKAEKKK RKSSTAKVSK DERNILKDVE  600
KTEVSTEEGK VSSNKETTTQ GETTPQADLS SKGKSRRKLG IQQALTEECK PTKGTDDTGS  660
DKFSYSVNNV VDLKDKLSHC LSSRLLRRWC MFEWFYSAIE YPWFAKSEFV EYLNHVKLGH  720
VPRLTRVEWG VIRSSLGKPR RLSKQFLHEE REKLSQYRDS VRQHYAELRS GVREGLPTDL  780
ARPLAVGQRV IACHPRTREL HDGNVLTVDN NCCRVQFDRP ELGVEFVMTT TQGETTPQAD  840
LSSKGKSRRK LGIQQALTEE CKPTKGTDDT GSDKFSYSVN NVVDLKDKLS HCLSSRLLRR  900
WCMFEWFYSA IEYPWFAKSE FVEYLNHVKL GHVPRLTRVE WGVIRSSLGK PRRLSKQFLH  960
EEREKLSQYR DSVRQHYAEL RSGVREGLPT DLARPLAVGQ RVIACHPRTK ELHDGNVLTV  1020
DNNCCRVQFD RPELGVDSLG KPRRLSKQFL HEEREKLSQY RDSVRQHYAE LRSGVREGLP  1080
TDLARPLAVG QRVIACHPRT KELHDGNVLT VDNNCCRVQF DRPELGVEFV MDIDCMPLHP  1140
MENFPESLRQ QNIDNKYLSE VKLEDQMKEL GSGGAARFTS NVNVNGADAT FHIPSGHPID  1200
TLMKQAKGDT INSIAQAKAT VNEVAVAAQQ AMYNQPCSHS QIQEREADIK ALAELSQLRH  1260
MNEEVSGKQK DGETIRDLKH FRTQYAMVLV QLRDSNDQVA SALLSLRQRN TYHGNPSQAY  1320
PTSMENGGSF TAPDPYNRFG YINPESGSQV IEVIETSRCR AKMMVDVAVQ AMFKVSEGEN  1380
AFAKIGEALD NLSSRGTGSG SSILGIRRIP PDSGQANTSY QDNGTPTPAA LNSSSPRLPN  1440
GCDSEAQFPT ELISSCVATI LMIQNCTEKQ YHPAEVAHIL DSALSRLQPC SSQNMPIFRE  1500
IEMCMGIIKN QMLALIPTPS G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1398414QKKVKKSQKRRKKAARK
2401407VKKSQKR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462951276
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820688.10.0protein ALWAYS EARLY 2-like
TrEMBLA0A2T8IHJ00.0A0A2T8IHJ0_9POAL; Uncharacterized protein
STRINGSi025839m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62302331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.21e-137DNA binding