PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462951306
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MIKC_MADS
Protein Properties Length: 185aa    MW: 21579.8 Da    PI: 10.821
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462951306genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.31.1e-29959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krien++ rqvtf+kRrng+lKKA+ELS+LCdae+a+iifs +g+lyeys+
  462951306  9 KRIENTTSRQVTFCKRRNGLLKKAYELSILCDAEIALIIFSGRGRLYEYSN 59
               79***********************************************95 PP
2K-box112.44.7e-3783171997
      K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                 + + +++ qqe+akL+++i++Lq+++Rhl+Ge+++++++keL++Le++Le+++ +iRskK+ell+++ie++qk+e +lq+en++Lr+k
  462951306  83 IDVNSHQYFQQEAAKLRQQIQTLQNSNRHLMGESIGNMTVKELKNLENRLERGIGRIRSKKHELLFAEIEYMQKREADLQNENMYLRAK 171
                567889*********************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.151161IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-40160IPR002100Transcription factor, MADS-box
CDDcd002652.61E-42275No hitNo description
SuperFamilySSF554556.41E-32274IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003198.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-323859IPR002100Transcription factor, MADS-box
PfamPF014866.9E-3085171IPR002487Transcription factor, K-box
PROSITE profilePS5129715.16688179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MGRGKIEIKR IENTTSRQVT FCKRRNGLLK KAYELSILCD AEIALIIFSG RGRLYEYSNN  60
SIRSTIERYK KASASTSGSA PVIDVNSHQY FQQEAAKLRQ QIQTLQNSNR HLMGESIGNM  120
TVKELKNLEN RLERGIGRIR SKKHELLFAE IEYMQKREAD LQNENMYLRA KRLIELRSRR  180
QKATR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-20173173Myocyte-specific enhancer factor 2B
1tqe_Q3e-20173173Myocyte-specific enhancer factor 2B
1tqe_R3e-20173173Myocyte-specific enhancer factor 2B
1tqe_S3e-20173173Myocyte-specific enhancer factor 2B
6c9l_A3e-20173173Myocyte-specific enhancer factor 2B
6c9l_B3e-20173173Myocyte-specific enhancer factor 2B
6c9l_C3e-20173173Myocyte-specific enhancer factor 2B
6c9l_D3e-20173173Myocyte-specific enhancer factor 2B
6c9l_E3e-20173173Myocyte-specific enhancer factor 2B
6c9l_F3e-20173173Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462951306
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0027231e-170KJ002723.1 Phyllostachys edulis MADS-box protein 21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970830.11e-114MADS-box transcription factor 21
SwissprotQ8RU311e-111MAD21_ORYSJ; MADS-box transcription factor 21
TrEMBLA0A3Q8C5F91e-114A0A3Q8C5F9_BAMML; MADS21
STRINGSi002551m1e-113(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64937144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.12e-91MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Dreni L, et al.
    The D-lineage MADS-box gene OsMADS13 controls ovule identity in rice.
    Plant J., 2007. 52(4): p. 690-9
    [PMID:17877710]