PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462951411
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GATA
Protein Properties Length: 150aa    MW: 16199.7 Da    PI: 10.9839
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462951411genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.53.2e-1768104135
       GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C++Cg +   Tp++Rrgpdg++tLCnaCGl+++ kgl
  462951411  68 CHHCGISAaaTPMMRRGPDGPRTLCNACGLMWANKGL 104
                *****99999***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510179.6733678IPR010402CCT domain
PfamPF062033.5E-113667IPR010402CCT domain
SMARTSM004013.0E-1262120IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.1762121IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.28E-1364126No hitNo description
Gene3DG3DSA:3.30.50.104.3E-1667109IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.61E-1367110No hitNo description
PROSITE patternPS0034406895IPR000679Zinc finger, GATA-type
PfamPF003203.3E-1568104IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
VQAVLLLLGG RELNPGLGAS SSSSAPYSKR LNFPHRVASL MRFREKRKER NFDKKIRYTV  60
RKEVALRCHH CGISAAATPM MRRGPDGPRT LCNACGLMWA NKGLLRDLSK SPVPLQAVQS  120
APQNGNAVAA PGVEQENPAA AMANGHELST
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462951411
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966123.17e-80GATA transcription factor 20 isoform X1
SwissprotQ5Z4U51e-76GAT20_ORYSJ; GATA transcription factor 20
TrEMBLA0A0A9EJS69e-79A0A0A9EJS6_ARUDO; Uncharacterized protein
STRINGSi006750m3e-79(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.24e-45ZIM-LIKE 2