PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462951840
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WOX
Protein Properties Length: 167aa    MW: 19077.5 Da    PI: 6.5172
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462951840genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.14.2e-101148137
               TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC CS
   Homeobox  1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl 37
               ++ R+++t+eq+++L elF+   r+ps+e++++++++l
  462951840 11 KCGRWNPTAEQVKVLTELFRAgLRTPSTEQIQRISTHL 48
               568*****************99**************99 PP
2Wus_type_Homeobox667e-221258349
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkN 49
                       + RW+Pt+eQ+k+L+el+++GlrtP++e+iqri+++L+++Gk+e+kN
          462951840 12 CGRWNPTAEQVKVLTELFRAGLRTPSTEQIQRISTHLSAFGKVESKN 58
                       78********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000462.0E-71248IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010078Biological Processmaintenance of root meristem identity
GO:1902459Biological Processpositive regulation of stem cell population maintenance
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MEALSGRVGV KCGRWNPTAE QVKVLTELFR AGLRTPSTEQ IQRISTHLSA FGKVESKNGD  60
GRAASHEAEV DLVLQPPESK REARTYSHHR LMTCYVRDMV DQQEAFWERP TREVETLELF  120
PLKSYDLEAE KVRYVRSAGE QCREFSFFDV TAGRDPPLEL RLCSFGP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the specification and maintenance of the stem cells (QC cells) in the root apical meristem (RAM). {ECO:0000269|PubMed:12904206}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462951840
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4902392e-73AM490239.1 Zea mays mRNA for putative wuschel homeobox protein (wox5B gene).
GenBankEU9697172e-73EU969717.1 Zea mays clone 334641 WUSCHEL-related homeobox 5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970617.12e-96WUSCHEL-related homeobox 9
SwissprotQ8W0F15e-97WOX9_ORYSJ; WUSCHEL-related homeobox 9
TrEMBLK3XLX74e-95K3XLX7_SETIT; Uncharacterized protein
STRINGSi002900m7e-96(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94113643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11260.17e-32WUSCHEL related homeobox 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li S, et al.
    OsFIE2 plays an essential role in the regulation of rice vegetative and reproductive development.
    New Phytol., 2014. 201(1): p. 66-79
    [PMID:24020752]
  3. Chu H, et al.
    A CLE-WOX signalling module regulates root meristem maintenance and vascular tissue development in rice.
    J. Exp. Bot., 2013. 64(17): p. 5359-69
    [PMID:24043854]
  4. Wang W, et al.
    Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice.
    PLoS Genet., 2014. 10(3): p. e1004154
    [PMID:24625559]
  5. Coudert Y, et al.
    Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of postembryonic root formation.
    New Phytol., 2015. 206(1): p. 243-54
    [PMID:25442012]