PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462952042
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family TALE
Protein Properties Length: 170aa    MW: 19350.6 Da    PI: 4.8204
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462952042genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox246.5e-081211542154
                HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                k +yp+++++++L +++gL+ +q+ +WF N+R +
  462952042 121 KWPYPTEDDKARLVQETGLQLKQINNWFINQRKR 154
                569*****************************87 PP
2ELK285.1e-107596122
        ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
               ELK++L+++Y+++L+++++E++
  462952042 75 ELKNELKQGYKEKLVDIREEIL 96
               9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037898.3E-77596IPR005539ELK domain
SMARTSM011880.00237596IPR005539ELK domain
PROSITE profilePS5121310.0577595IPR005539ELK domain
PROSITE profilePS5007111.38695158IPR001356Homeobox domain
SuperFamilySSF466893.81E-1697161IPR009057Homeodomain-like
SMARTSM003892.8E-1097162IPR001356Homeobox domain
CDDcd000861.44E-1198159No hitNo description
Gene3DG3DSA:1.10.10.608.0E-25102159IPR009057Homeodomain-like
PfamPF059203.3E-18115154IPR008422Homeobox KN domain
PROSITE patternPS000270133156IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MEAVMGCWEL EQSLQSLTGA SPGEGTGATM SDDEDNQVDS EANMFDGNDG SDGMGFGPLM  60
LTEGERSLVE RVRQELKNEL KQGYKEKLVD IREEILRKRR AGKLPGDTAS VLKAWWQAHS  120
KWPYPTEDDK ARLVQETGLQ LKQINNWFIN QRKRNWHSNP TSSERLDMHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-1398162872Homeobox protein PKNOX1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462952042
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0685100.0BT068510.1 Zea mays full-length cDNA clone ZM_BFb0231A20 mRNA, complete cds.
GenBankBT0836590.0BT083659.1 Zea mays full-length cDNA clone ZM_BFb0026A02 mRNA, complete cds.
GenBankHQ8587490.0HQ858749.1 Zea mays clone UT1455 ORPHAN transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001169973.11e-118putative knotted-like transcription factor family protein
SwissprotQ0E3C31e-117KNOS2_ORYSJ; Homeobox protein knotted-1-like 2
TrEMBLC4IYL21e-117C4IYL2_MAIZE; Uncharacterized protein
STRINGGRMZM2G370332_P021e-117(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-102KNOTTED1-like homeobox gene 3