PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462952234
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family Nin-like
Protein Properties Length: 938aa    MW: 102499 Da    PI: 6.0695
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462952234genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK84.87.9e-27570620252
     RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                ek+ sl++l+kyFs++++dAA +Lgvc+T+LKriCRq+GI+RWP+Rki+++
  462952234 570 EKNFSLDVLRKYFSGSLRDAAVSLGVCPTTLKRICRQHGISRWPSRKINKV 620
                899**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.552554640IPR003035RWP-RK domain
PfamPF020423.0E-24573620IPR003035RWP-RK domain
SuperFamilySSF542774.49E-24829919No hitNo description
Gene3DG3DSA:3.10.20.2402.7E-22833915No hitNo description
PROSITE profilePS5174525.156836918IPR000270PB1 domain
SMARTSM006662.2E-21836918IPR000270PB1 domain
PfamPF005642.2E-17837917IPR000270PB1 domain
CDDcd064071.59E-29837917No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 938 aa     Download sequence    Send to blast
MDLPAPSNRA GCNGNIGSPM GSSDDPFGGA AMMNFDGYSE LCSPSVADQI FSLLNDPSAA  60
QQMFAMWSSL GSSPRASGMN QDMLFENCPG PVETDATPSQ KINLASPVNT AEVDRVIKDS  120
DEVVPNNSQL QGSNIIPRSV VGNILADKML VALSLFRKSL SDGVLAQVWM PVEHNGQVLL  180
STCEQPFLLD QVLAGYREVS RHFLFSVKEE PGLHLGLPGR VFISGVPEWT SNVLYYSKPE  240
YLRMEHAVHH EIRGSLAMPI YDPSKGSCCA VLELVTNTEK TDFDAEMDSA VNLQTITDRS  300
SQKCMWSPRL QVYSENQKSA FTEILDVLRA ICHAHMLPLA LTWVPTSNGI GNGYSVGKDI  360
SIGSESGKAI LRIHESACYV NDTKMQGFLH ACTERHLEKG QGIAGRAFKS NLPFFSPDIR  420
EYSIEDYPLA HHARKFGLHA AVAIRLRSTY TGSDDYILEF FLPVNCKGSG EQQMLLNNLS  480
STMQRICKSL RTVSEAEVDN VNACSAAMHE HTNECHLRPG NSDSSSQDEP PVTESAFQDL  540
SLVDKRQDME HEQAQTSTIR VAEKRRNTSE KNFSLDVLRK YFSGSLRDAA VSLGVCPTTL  600
KRICRQHGIS RWPSRKINKV NRSLKKIQTV INSVHGVDRS LQYDPATGSL VPAASLPDRT  660
LFSACDALPT PSVGKIVEKK SSPKSEQGFS SPDGCQRESS QLQVPGVHKR EGDKFGVLAS  720
DNNGSNLLNI TRHSNSEGAQ GPLYPIGAID SLHTTCYIDS STSLHPSIDS IEDQTVGRNS  780
SFVQQADVDM ADGHDTKEHT HPSTSGMTDS SSGSASSQPT FKGNPGHTLK DRTSPALTVK  840
ATYNGDTVRF KFLPSLGWYN LLEEIAKRFK LATGAFQLKY KDDEDEWVIL ANDSDLQECV  900
DVLDSIGSRN VKLQVRDLPC LISSSGSSSC LQVEAHSS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462952234
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823107.10.0protein NLP2-like
SwissprotQ0JC270.0NLP2_ORYSJ; Protein NLP2
TrEMBLA0A2S3I8330.0A0A2S3I833_9POAL; Uncharacterized protein
STRINGPavir.J35714.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36703573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59580.21e-180Nin-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]