PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462952334
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 216aa    MW: 24338.5 Da    PI: 9.5216
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462952334genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.44.3e-1568114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT eEde l +av  + g++Wk+Ia+ ++  Rt+ qc +rwqk+l
        462952334  68 KGGWTIEEDETLHRAVDAFDGRHWKKIAEFLP-DRTEVQCLHRWQKVL 114
                      688*****************************.************986 PP
2Myb_DNA-binding62.67.9e-20120166148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd++++d vk++G++ W+ Ia+ +  gR +kqc++rw+++l
        462952334 120 KGPWTQEEDDIIIDMVKKHGPKKWSVIAKSLD-GRIGKQCRERWHNHL 166
                      79******************************.*************97 PP
3Myb_DNA-binding331.4e-10172205136
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRt 36 
                      + +WT eE+  l++a++ +G++ W+ Ia+ ++ gR 
        462952334 172 KEAWTVEEERVLANAHRVYGNK-WAEIAKLLP-GRN 205
                      579*******************.*********.995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.44763114IPR017930Myb domain
SuperFamilySSF466892.01E-1564121IPR009057Homeodomain-like
SMARTSM007173.6E-1267116IPR001005SANT/Myb domain
PfamPF002494.8E-1368114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-2270122IPR009057Homeodomain-like
CDDcd001679.86E-1171114No hitNo description
PROSITE profilePS5129432.246115170IPR017930Myb domain
SuperFamilySSF466891.48E-27117205IPR009057Homeodomain-like
SMARTSM007175.6E-18119168IPR001005SANT/Myb domain
PfamPF002494.3E-18120166IPR001005SANT/Myb domain
CDDcd001676.88E-15122166No hitNo description
Gene3DG3DSA:1.10.10.602.8E-27123170IPR009057Homeodomain-like
PROSITE profilePS5129410.92171216IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-13171205IPR009057Homeodomain-like
SMARTSM007170.0045171215IPR001005SANT/Myb domain
PfamPF002498.7E-9172204IPR001005SANT/Myb domain
CDDcd001672.36E-6174208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MGAMPAVKVE EGDGAAGNWG NLAAWSPSEL ASEAASYGGG ARMSTVLSSP MDSDSGRRRT  60
SGPVRRAKGG WTIEEDETLH RAVDAFDGRH WKKIAEFLPD RTEVQCLHRW QKVLNPELRK  120
GPWTQEEDDI IIDMVKKHGP KKWSVIAKSL DGRIGKQCRE RWHNHLDPQI RKEAWTVEEE  180
RVLANAHRVY GNKWAEIAKL LPGRNIWQSA EVGKKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-61672045142MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-61672045142MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462952334
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809062.11e-115transcription factor MYB3R-2-like isoform X1
RefseqXP_025809063.11e-118transcription factor MYB3R-2-like isoform X2
SwissprotQ0JHU76e-90MB3R2_ORYSJ; Transcription factor MYB3R-2
TrEMBLA0A0A9DCG71e-114A0A0A9DCG7_ARUDO; Uncharacterized protein
STRINGSi021484m1e-106(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30993880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.22e-89myb domain protein 3r-5
Publications ? help Back to Top
  1. Kakar KU, et al.
    A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).
    Plant Biol (Stuttg), 2016. 18(3): p. 471-83
    [PMID:26681628]