PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462952358
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family TALE
Protein Properties Length: 336aa    MW: 37193 Da    PI: 6.6062
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462952358genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.71.1e-092592942055
                HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
   Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                +k +yps++e+  LA+ +gL+++q+ +WF N+R ++
  462952358 259 YKWPYPSETEKIALAAATGLDQKQINNWFINQRKRH 294
                4679*****************************885 PP
2ELK439.4e-15214235122
        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                ELKhqLlrKY+gyLg+L+qEFs
  462952358 214 ELKHQLLRKYGGYLGGLRQEFS 235
                9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.5E-2288132IPR005540KNOX1
PfamPF037908.1E-2389130IPR005540KNOX1
SMARTSM012561.5E-11136185IPR005541KNOX2
PfamPF037911.2E-13149184IPR005541KNOX2
PfamPF037893.6E-11214235IPR005539ELK domain
SMARTSM011884.2E-8214235IPR005539ELK domain
PROSITE profilePS5121311.575214234IPR005539ELK domain
PROSITE profilePS5007112.746234297IPR001356Homeobox domain
SuperFamilySSF466891.24E-19235304IPR009057Homeodomain-like
SMARTSM003891.6E-12236301IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-27239300IPR009057Homeodomain-like
CDDcd000861.90E-12246297No hitNo description
PfamPF059201.1E-16254293IPR008422Homeobox KN domain
PROSITE patternPS000270272295IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MESFVDLGGG CSSRSTSNAS FLQLPLPAAA SASASAQAIA PEAQQDRSRL ALQQLLVAPS  60
SSVPASRHGH QKDDGAVVQG EISPADAETI KAKIMSHPQY SALLAAYLDC QKVGAPPDVS  120
DRLSAVAAKL DAQRWQRILI HFDPLIRFEA YCNMLVKYQE ELARPIQEAA EFFKSVERQL  180
DLITDSAGEG AGSSEDDQDT SCAEDVDPSA EDKELKHQLL RKYGGYLGGL RQEFSKRKKK  240
GKLPKEARQK LLHWWELHYK WPYPSETEKI ALAAATGLDQ KQINNWFINQ RKRHWKPTSE  300
DMPFGTMMEG GGFHVPSAAL YLDRPFMADG MYRLGS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}.
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:9869405}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462952358
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9663731e-145EU966373.1 Zea mays clone 293957 homeobox protein rough sheath 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795146.11e-160homeobox protein knotted-1-like 12 isoform X3
SwissprotO650341e-113KNOSC_ORYSI; Homeobox protein knotted-1-like 12
SwissprotO804161e-113KNOSC_ORYSJ; Homeobox protein knotted-1-like 12
TrEMBLA0A0A9GAR11e-174A0A0A9GAR1_ARUDO; Uncharacterized protein
STRINGSb01g006790.11e-153(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40613873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.17e-85KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Sato Y, et al.
    Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants.
    EMBO J., 1999. 18(4): p. 992-1002
    [PMID:10022841]
  2. Ito Y,Eiguchi M,Kurata N
    KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice.
    Genesis, 2001. 30(4): p. 231-8
    [PMID:11536429]
  3. Nagasaki H,Sakamoto T,Sato Y,Matsuoka M
    Functional analysis of the conserved domains of a rice KNOX homeodomain protein, OSH15.
    Plant Cell, 2001. 13(9): p. 2085-98
    [PMID:11549765]
  4. Postma-Haarsma AD, et al.
    Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice.
    Plant Mol. Biol., 2002. 48(4): p. 423-41
    [PMID:11908517]
  5. Kuijt SJ, et al.
    Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice.
    Plant Mol. Biol., 2004. 55(6): p. 781-96
    [PMID:15604716]
  6. Yin H, et al.
    SUI-family genes encode phosphatidylserine synthases and regulate stem development in rice.
    Planta, 2013. 237(1): p. 15-27
    [PMID:22956125]