PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462952400

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

C2H2

Protein Properties

Length: 46aa MW: 5183.78 Da PI: 5.4557

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462952400	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.7	4.7e-06	24	46	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F + L H++ H 462952400 24 FVCSYCDRKFCNAQALGGHQNAH 46 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.49E-5	22	46	No hit	No description
PROSITE profile	PS50157	10.471	24	46	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	26	46	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 46 aa Download sequence Send to blast
EEQELNLELT LLHRSISPEP QGVFVCSYCD RKFCNAQALG GHQNAH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462952400

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001144380.1	9e-20	uncharacterized protein LOC100277305
Refseq	XP_002462423.1	2e-19	uncharacterized protein LOC8056008
Refseq	XP_008670210.1	9e-20	zinc finger protein 2
TrEMBL	A0A0A9HWN6	7e-19	A0A0A9HWN6_ARUDO; Uncharacterized protein
STRING	Sb02g025380.1	7e-19	(Sorghum bicolor)
STRING	GRMZM2G115388_P01	4e-19	(Zea mays)
STRING	GRMZM2G403590_P01	4e-19	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	6e-09	zinc finger protein 4