PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462952672
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 602aa    MW: 65724.6 Da    PI: 5.3956
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462952672genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY32.12.3e-10137160225
                --SS-EEEEEEE--TT-SS-EEEE CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYY 25 
                +Dgy+W KYGqK vkg+++pr  Y
  462952672 137 SDGYRWHKYGQKIVKGNPNPRLIY 160
                8********************766 PP
2WRKY53.45e-172182572059
                S-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY  20 fprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                +p sYYrCt+ gCpv+k+ve++ +d + +++tYeg+Hnh+
  462952672 218 MPLSYYRCTHGGCPVRKHVEKAPDDDNNIVVTYEGKHNHD 257
                799************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF546958.63E-253108IPR011333SKP1/BTB/POZ domain
Gene3DG3DSA:3.30.710.109.6E-273108No hitNo description
PfamPF006516.6E-2119107IPR000210BTB/POZ domain
PROSITE profilePS5009717.0452693IPR000210BTB/POZ domain
SMARTSM002253.8E-1326133IPR000210BTB/POZ domain
Gene3DG3DSA:2.20.25.803.1E-25129156IPR003657WRKY domain
SuperFamilySSF1182909.42E-8131160IPR003657WRKY domain
PROSITE profilePS5081123.881131259IPR003657WRKY domain
SMARTSM007749.0E-26136258IPR003657WRKY domain
PfamPF031066.9E-7138160IPR003657WRKY domain
SuperFamilySSF1182902.09E-13217259IPR003657WRKY domain
PfamPF031061.5E-12218257IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.1E-25220259IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MAVEVQVPPS NLSDNFVKFL ETEEEVDVTF TVKGEAFRAH RLVLAMRSPV FKAELCGAMK  60
HKGMESITIE EMEPAVFKAL LHFIYTDSLP DDLDGDDIVK HLLVAADRTV EFSTPNFTPV  120
LRTVKEQKII VQAGNMSDGY RWHKYGQKIV KGNPNPRLIY DDIRLSINSI TAEQCYAVQA  180
SRYLLRSMCC FDGLKGSFVP DALCTSYGVC GNRLWDAMPL SYYRCTHGGC PVRKHVEKAP  240
DDDNNIVVTY EGKHNHDEPF RRDMSISVIP QSVITAEQPN TSTSTSLITP SATTTEQPSA  300
STSASDKKLP TSTQKVAVVE CVKDTALKLG GEKAIESAET LLSLPWNVAG VGELDGGGVG  360
CDDAGGVVDE AGCIDVVVRE KGESRAYLAR GGDEQDVGVL THNLLNLISV LLMRDHEQRL  420
EPLAVRAVMA QKTSLTTRHN AEILYSSKTS DQGEPDGLGY LGPVLEGQEA VVVALGLHVG  480
DGVGGDAVDD DVLSFLDSGT VVLVLHVRTQ LLGDGRPADP VQHLLVPEQS HARACSTFEV  540
SIDAIDVLLT KLEIESRRRT SVLIWAANWR GIDQLTCGTR LQRGWRSAPR TSRRGTALRR  600
LC
Cis-element ? help Back to Top
SourceLink
PlantRegMap462952672
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0922616e-46FP092261.1 Phyllostachys edulis cDNA clone: bphyem204g24, full insert sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.16e-17WRKY DNA-binding protein 32