PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462952675
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 895aa    MW: 96746.7 Da    PI: 7.4967
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462952675genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.71.3e-29259315259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 Dg+nWrKYGqK+vk+s+++rsYYrCts+gC +kkkve+   d++vvei+Y+g Hnhe
  462952675 259 ADGFNWRKYGQKQVKSSDNSRSYYRCTSSGCLAKKKVEHFP-DGRVVEIIYRGAHNHE 315
                7****************************************.***************8 PP
2WRKY93.71.3e-29508564259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 Dg+nWrKYGqK+vk+s+++rsYYrCts+gC +kkkve+   d++vvei+Y+g Hnhe
  462952675 508 ADGFNWRKYGQKQVKSSDNSRSYYRCTSSGCLAKKKVEHFP-DGRVVEIIYRGAHNHE 564
                7****************************************.***************8 PP
3WRKY97.96.4e-31679736259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                +Dgy+WrKYGqK vkg++ prsYYrCt+ gCpv+k+ve++ +d + +++tYeg+Hnh+
  462952675 679 SDGYRWRKYGQKIVKGNPKPRSYYRCTHGGCPVRKHVEKAPDDDNNIVVTYEGKHNHD 736
                8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-25252317IPR003657WRKY domain
PROSITE profilePS5081122.435253317IPR003657WRKY domain
SuperFamilySSF1182905.89E-23254317IPR003657WRKY domain
SMARTSM007741.4E-31258316IPR003657WRKY domain
PfamPF031063.3E-22260315IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-25501566IPR003657WRKY domain
PROSITE profilePS5081122.435502566IPR003657WRKY domain
SuperFamilySSF1182905.89E-23503566IPR003657WRKY domain
SMARTSM007741.4E-31507565IPR003657WRKY domain
PfamPF031063.3E-22509564IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-30671738IPR003657WRKY domain
SuperFamilySSF1182904.84E-27673738IPR003657WRKY domain
PROSITE profilePS5081132.489673738IPR003657WRKY domain
SMARTSM007749.0E-35678737IPR003657WRKY domain
PfamPF031062.9E-25680736IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 895 aa     Download sequence    Send to blast
MAAGDPEPEP AEEKRPSPGE EAVAAEAEET RPTPAEAPGA PAEEKRPAPA PAAEADTRPP  60
PEPPGKPPGF AAVLDTGVEV KAEPGAGDKL EKEMKKKGKI EAKVAKVSEV KVEATRRPAG  120
SSAEAPILAV PMVAVPCFIA PPGFPVGLPL SSISIYLPLL DGWPRLVAFK SAVRGQFVMS  180
HQAALASVTA QAQMHLQSPS SSAYSEAPSS PFYITPKAIV PLQQAPSASE VTICSTPKAD  240
RLSSSEPKSP HHVVVNMVAD GFNWRKYGQK QVKSSDNSRS YYRCTSSGCL AKKKVEHFPD  300
GRVVEIIYRG AHNHEPPQKT RFAKERVPPI RVPSGDETLR LVNTEIVDSH TPKHKLGQSS  360
VTETSEHASE QQLFCSSDCE GDAGNKSEDE HPSAEPLPKR RTVEFSTPNF TPVLRTVKEQ  420
KIIGQFVMSH QAALASVTAQ AQMHLQSPTS SAYSEAPSSP FYITPKAVVP LQQAPSASEV  480
TICSTPKADR LSSSEPKSPH HVVVNMVADG FNWRKYGQKQ VKSSDNSRSY YRCTSSGCLA  540
KKKVEHFPDG RVVEIIYRGA HNHEPPQKTR FAKERVPPIR VPSGDETLRL VNTEIVDSHT  600
PKHKLGQSSV TETSEHASEQ QLFCSSDCEG DAGNKSEDEH PSAEPLPKRR TVEFSTPNFT  660
PVLRTVKEQK IIVQAGNMSD GYRWRKYGQK IVKGNPKPRS YYRCTHGGCP VRKHVEKAPD  720
DDNNIVVTYE GKHNHDEPFK RDMSISVIPP SVITAEEPST SPSTSVITPS ATTTEQPSTS  780
TSASDKKLPT STQKDAVIEP VKDTASELGG EKAIESAQTL LSMSTNSDEM KNSVLKETSP  840
ASNGDDPARC YTGVNAKLGA GSKSFTAFFT ASTSMSISFP VADEMMVQLA LSSTF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-256787381777Probable WRKY transcription factor 4
2lex_A3e-256787381777Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462952675
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445412.10.0probable WRKY transcription factor 32
TrEMBLC5YKD90.0C5YKD9_SORBI; Uncharacterized protein
STRINGSb07g016330.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58203455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.18e-65WRKY DNA-binding protein 4