PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462953047

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

M-type_MADS

Protein Properties

Length: 94aa MW: 10538.1 Da PI: 11.3988

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462953047	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	84.7	5.4e-27	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien rqvtfskRr g++KKAeEL vLCda+va+i+fs tgkl ++s 462953047 10 RIENAAARQVTFSKRRRGLFKKAEELAVLCDADVALIVFSATGKLSQFAS 59 8*********************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	6.7E-36	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	28.427	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.44E-26	1	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.0E-25	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.7E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.0E-25	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.0E-25	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 94 aa Download sequence Send to blast
MARERREIRR IENAAARQVT FSKRRRGLFK KAEELAVLCD ADVALIVFSA TGKLSQFASS 60 RHAHSHHATL LPSAPPLHAL FRVDLNSIFD SSLQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	1e-17	1	60	1	60	MEF2C
5f28_B	1e-17	1	60	1	60	MEF2C
5f28_C	1e-17	1	60	1	60	MEF2C
5f28_D	1e-17	1	60	1	60	MEF2C
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. May be required for spikelet (rice flower) development. {ECO:0000269\|PubMed:15682279}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462953047

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ588326	8e-78	HQ588326.1 Brachypodium distachyon MADS-box (SVP) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025810223.1	8e-32	MADS-box transcription factor 22
Swissprot	Q9XJ66	1e-31	MAD22_ORYSJ; MADS-box transcription factor 22
TrEMBL	A0A453PLK9	2e-35	A0A453PLK9_AEGTS; Uncharacterized protein
STRING	Si007641m	4e-34	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	9e-20	MIKC_MADS family protein

Publications ? help Back to Top
Lee S,Choi SC,An G Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses. Plant J., 2008. 54(1): p. 93-105 [PMID:18182025] Lee S,Jeong DH,An G A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses. Plant Signal Behav, 2008. 3(7): p. 471-4 [PMID:19704489]