PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462953182

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

MYB

Protein Properties

Length: 218aa MW: 24964.4 Da PI: 8.7954

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462953182	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.9	7.4e-11	2	39	11	48
HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +l++ v+++G ++W+ Ia+ g++Rt+k+c++rw +yl 462953182 2 QLLCTVRLFGDRRWDFIAQVSGLNRTGKSCRLRWVNYL 39 68999*******************************97 PP
2	Myb_DNA-binding	55.4	1.4e-17	46	90	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 gr++++E+ l++++++++G++ W++Iar+++ gRt++++k++w++++ 462953182 46 GRMSPQEEHLIIELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 90 89*****************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.12	1	41	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	12.289	1	39	IPR017930	Myb domain
SuperFamily	SSF46689	4.3E-23	2	86	IPR009057	Homeodomain-like
Pfam	PF00249	1.9E-9	2	39	IPR001005	SANT/Myb domain
CDD	cd00167	3.31E-6	2	39	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.7E-14	3	46	IPR009057	Homeodomain-like
PROSITE profile	PS51294	25.812	40	94	IPR017930	Myb domain
SMART	SM00717	4.3E-15	44	92	IPR001005	SANT/Myb domain
Pfam	PF00249	5.7E-16	46	89	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.0E-24	47	93	IPR009057	Homeodomain-like
CDD	cd00167	1.80E-11	47	90	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MQLLCTVRLF GDRRWDFIAQ VSGLNRTGKS CRLRWVNYLH PGLKHGRMSP QEEHLIIELH 60 ARWGNRWSRI ARRLPGRTDN EIKNYWRTHM RKKAQDRKMS MSPSCSSSSL TYQSFLLDTT 120 PTTGITGDAH NGNSCITSAL ESTQSITDGY PMDQIWKEIE APHAPAMLGI DDPKEKAYGS 180 LPCPPMTTAI WDYKCPELSW KMEDDGIRML SPQFAYGN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	2e-20	1	94	13	105	MYB PROTO-ONCOGENE PROTEIN
1h88_C	9e-20	1	94	67	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	9e-20	1	94	67	159	MYB PROTO-ONCOGENE PROTEIN
1mse_C	3e-20	2	94	14	105	C-Myb DNA-Binding Domain
1msf_C	3e-20	2	94	14	105	C-Myb DNA-Binding Domain
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462953182

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004980031.1	1e-125	myb-related protein MYBAS1
Swissprot	Q53NK6	1e-113	MYBA1_ORYSJ; Myb-related protein MYBAS1
TrEMBL	K3ZJP9	1e-123	K3ZJP9_SETIT; Uncharacterized protein
STRING	Si026803m	1e-124	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP636	37	169

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59780.3	4e-63	myb domain protein 59

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]