PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462953209

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

GRAS

Protein Properties

Length: 755aa MW: 81564.8 Da PI: 7.0039

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462953209	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	137.1	1.9e-42	377	528	1	137
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetsekn........sseelaalklfsevsPi 90 lv+lLl+cA++vs+gd+ a + L l+ asp gd+mqR+a+yf+ ALaarl+ s ++ ++a ++ ++++++ + + a l ++P+ 462953209 377 LVHLLLACADFVSKGDQPSALHHLHLLRRVASPLGDSMQRVASYFADALAARLTTlsSNPSSSSAAAA-ASTPRRrrrvpvpfPAVARDAEDLPDPACPY 475 68*************************************************996333333333333.333333357775554444455566889 PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp......e 137 +kf+h+taNqaI ea++ge+rvH++D+di qG QWpa+lqaLa+Rp + 462953209 476 IKFAHFTANQAIFEAFAGEDRVHVVDLDILQGYQWPAFLQALAARPrrrqgdG 528 *******************************************96665422 PP
2	GRAS	161.9	5.6e-50	556	710	198	357
GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297 p EalaVn v +lhr++ ++l +L+++++ Pk++++veqea hn++ Fl rfleal+yysa+fdsl+a++p++s r+kvE+ ll++ei+nv 462953209 556 PPEALAVNAVNRLHRVP--GAHLG----PLLSMIRDQAPKIMTLVEQEAGHNGPYFLGRFLEALHYYSAIFDSLDATFPADSAPRMKVEQCLLAPEIRNV 649 58************9..44444....5******************************************************************* PP GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgs 357 vacegaer++rhe+l +Wr+ +e GF+pvpls a+ q + ll ++ +dgyr++e++g 462953209 650 VACEGAERVARHERLDRWRRIMEGRGFEPVPLSPAAVGQSQVLLGLYGaGDGYRLNEDKGP 710 *******************************************************9985 PP
3	GRAS	35	2e-11	712	754	333	374
GRAS 333 aakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 a+ q + ll ++ +dgyr++e++g+l+lgW+dr+++++SaWr 462953209 712 AVGQSQVLLGLYGaGDGYRLNEDKGCLLLGWQDRAIIAASAWR 754 78899*************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	42.701	351	706	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.5E-40	377	528	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.9E-47	556	710	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.9E-9	712	754	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 755 aa Download sequence Send to blast
MGMLNCADTN SGVKIQQQQA PTSPTASVSE SNIVVSSTDP DANDALAGLQ ALKFDGDIDE 60 IQSPDLAMWE SLFADQMGAS GADFLMFSPR RDFMATGSPR RDFMVSSPKR DYMASSPKRD 120 YMISSPKRDY MVSSPKREYM VTSPRREMVS SPRRSTFSNL YSTSTAGSHG NHQQGYLHGM 180 QGAEGSGAFH QQFGNLANNG KGKSMSPLHK VYINNAHSNS GKSHGPSSLS CSSSYGHGEN 240 LSLPSMDPFL DDYKEGGYLG YQLPVKPGAD NGAASATVTT VAPSSSQLPT LSECLAMPEP 300 VYGEAVTAAT MAAAGQLQMG GDLQHDMFYE AQFGEGLSLQ HQMAKSDQWA TDSSLHSMLG 360 SVIQAEAEQD QDSGLQLVHL LLACADFVSK GDQPSALHHL HLLRRVASPL GDSMQRVASY 420 FADALAARLT TLSSNPSSSS AAAAASTPRR RRRVPVPFPA VARDAEDLPD PACPYIKFAH 480 FTANQAIFEA FAGEDRVHVV DLDILQGYQW PAFLQALAAR PRRRQGDGPP PRVAGRLAPR 540 AVRVPRRRRR PAPAPPPEAL AVNAVNRLHR VPGAHLGPLL SMIRDQAPKI MTLVEQEAGH 600 NGPYFLGRFL EALHYYSAIF DSLDATFPAD SAPRMKVEQC LLAPEIRNVV ACEGAERVAR 660 HERLDRWRRI MEGRGFEPVP LSPAAVGQSQ VLLGLYGAGD GYRLNEDKGP AAVGQSQVLL 720 GLYGAGDGYR LNEDKGCLLL GWQDRAIIAA SAWRC

Sequence ? help Back to Top

Protein Sequence Length: 755 aa Download sequence Send to blast

MGMLNCADTN SGVKIQQQQA PTSPTASVSE SNIVVSSTDP DANDALAGLQ ALKFDGDIDE  60
IQSPDLAMWE SLFADQMGAS GADFLMFSPR RDFMATGSPR RDFMVSSPKR DYMASSPKRD  120
YMISSPKRDY MVSSPKREYM VTSPRREMVS SPRRSTFSNL YSTSTAGSHG NHQQGYLHGM  180
QGAEGSGAFH QQFGNLANNG KGKSMSPLHK VYINNAHSNS GKSHGPSSLS CSSSYGHGEN  240
LSLPSMDPFL DDYKEGGYLG YQLPVKPGAD NGAASATVTT VAPSSSQLPT LSECLAMPEP  300
VYGEAVTAAT MAAAGQLQMG GDLQHDMFYE AQFGEGLSLQ HQMAKSDQWA TDSSLHSMLG  360
SVIQAEAEQD QDSGLQLVHL LLACADFVSK GDQPSALHHL HLLRRVASPL GDSMQRVASY  420
FADALAARLT TLSSNPSSSS AAAAASTPRR RRRVPVPFPA VARDAEDLPD PACPYIKFAH  480
FTANQAIFEA FAGEDRVHVV DLDILQGYQW PAFLQALAAR PRRRQGDGPP PRVAGRLAPR  540
AVRVPRRRRR PAPAPPPEAL AVNAVNRLHR VPGAHLGPLL SMIRDQAPKI MTLVEQEAGH  600
NGPYFLGRFL EALHYYSAIF DSLDATFPAD SAPRMKVEQC LLAPEIRNVV ACEGAERVAR  660
HERLDRWRRI MEGRGFEPVP LSPAAVGQSQ VLLGLYGAGD GYRLNEDKGP AAVGQSQVLL  720
GLYGAGDGYR LNEDKGCLLL GWQDRAIIAA SAWRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-57	384	753	26	378	Protein SCARECROW
5b3h_A	9e-58	384	753	25	377	Protein SCARECROW
5b3h_D	9e-58	384	753	25	377	Protein SCARECROW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	544	550	PRRRRRP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462953209

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025828284.1	0.0	DELLA protein RGL1-like
TrEMBL	A0A1E5VBF2	0.0	A0A1E5VBF2_9POAL; DELLA protein GAI1
STRING	Si027708m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9221	31	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	3e-38	RGA-like 1