PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462953301
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GRAS
Protein Properties Length: 573aa    MW: 64247.5 Da    PI: 6.3098
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462953301genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4071.8e-1241675331371
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                l++++++c +av++ ++  ++al+++l++l+s +g+pmqRl ay++e+L arl+ +++ lyk+l+++e +     e +++++l++e++P++kf+++ aN 
  462953301 167 LKQVIIACGKAVDE-NACYVDALISELRQLVSVSGEPMQRLGAYMLEGLIARLSFTGHALYKSLKCKEPT---GPELMSSMHLLYEICPFFKFGYMSANG 262
                578999*****987.8999**************************************************9...9************************** PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                aI eav+ge+ +HiiDf+i qG QW +++qaLa+Rp+  p+lRiTg+++++s   +   l  +g+rL+++A+++g++fefn+ v  + +++ +e+L+v+p
  462953301 263 AIAEAVKGENFIHIIDFQIAQGSQWTTMIQALAARPGMRPHLRITGIDDSDSIhaRGGGLDIVGRRLQSVAQSCGLSFEFNA-VPAASHEVMFEHLAVRP 361
                *************************************************8877889999***********************.79999999********* PP

       GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                gEa+aVn+++qlh+++desv +e++rd++L++vkslsP+vv++veqea++n+++F+ r +e+l+yy+a+f+++++  pr++++r++ E+++++r+ivn++
  462953301 362 GEAIAVNFAYQLHHTPDESVGIENHRDRILRMVKSLSPRVVTLVEQEANTNTAPFFLRYMETLDYYTAMFEAIDVARPRDDKKRMNAEQHCVARDIVNLI 461
                **************************************************************************************************** PP

       GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                acegaer+erhe ++kWr+rl +aGF+++pls  +++++k+ll  ++   yr+ee++g l+lgWk+r+Lv++S
  462953301 462 ACEGAERVERHEPFGKWRARLAMAGFRQYPLSPVVNNTIKTLLDSYHTY-YRLEERDGVLYLGWKNRKLVVLS 533
                ***********************************************55.********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.687141517IPR005202Transcription factor GRAS
PfamPF035146.4E-122167533IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MTTQASNRSY RYPDNSQVPY YNSNLMHVGG NATYYMQQNH DDIHYLSSDD GSQTSNSRAQ  60
GFEAQYCTLD SSSADCVYPA NSSTSSQSIS GSPLSQQESH SDHAYGSSPS ASCVTQVPDF  120
DATLRDLENM MFGPDCDIVS SDSTLLPGMA LHQNNWRELL GIKTGDLKQV IIACGKAVDE  180
NACYVDALIS ELRQLVSVSG EPMQRLGAYM LEGLIARLSF TGHALYKSLK CKEPTGPELM  240
SSMHLLYEIC PFFKFGYMSA NGAIAEAVKG ENFIHIIDFQ IAQGSQWTTM IQALAARPGM  300
RPHLRITGID DSDSIHARGG GLDIVGRRLQ SVAQSCGLSF EFNAVPAASH EVMFEHLAVR  360
PGEAIAVNFA YQLHHTPDES VGIENHRDRI LRMVKSLSPR VVTLVEQEAN TNTAPFFLRY  420
METLDYYTAM FEAIDVARPR DDKKRMNAEQ HCVARDIVNL IACEGAERVE RHEPFGKWRA  480
RLAMAGFRQY PLSPVVNNTI KTLLDSYHTY YRLEERDGVL YLGWKNRKLV VLSWLCFLHM  540
NPRQFRSENS VIQNKGRAQN AEHVAIFEVW WIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-561645331372GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462953301
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985375.10.0scarecrow-like protein 21
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLA0A2T7CGG80.0A0A2T7CGG8_9POAL; Uncharacterized protein
STRINGSi035089m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]